CX291816

Overview
NameCX291816
Unique NameCX291816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15336 contig Ccv1_Contig15336:324..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291816 vs. ExPASy Swiss-Prot
Match: P4HA1_RAT (Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 54/154 (35.06%), Postives = 78/154 (50.65%), Query Frame = 1
Query:   49 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNI-----SAVPWWN 483
            +PR   +H+ +S  E E + +LA P + ++TV D +TGK   ++ R S   +L+               D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP    ++     +AV W+N
Sbjct:  334 KPRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFPEVGASVWPKKGTAVFWYN 487          
BLAST of CX291816 vs. ExPASy Swiss-Prot
Match: P4HA2_CAEEL (Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.896e-18
Identity = 51/141 (36.17%), Postives = 74/141 (52.48%), Query Frame = 1
Query:   31 VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFMDE----FNTKNGGQRMATVLMYLSDVEEGGETVF 441
            VE++ ++P A ++ N +   E E +  LA+P ++++TV +S TG+ + +  R S   +L                DFT L     E LQV +Y  G  Y+PHFD+   E    F T N G R+ATVL Y+S  E GG TVF
Sbjct:  318 VEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLKGDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTGNRIATVLFYMSQPERGGATVF 458          
BLAST of CX291816 vs. ExPASy Swiss-Prot
Match: P4HA1_CHICK (Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.006e-17
Identity = 54/154 (35.06%), Postives = 76/154 (49.35%), Query Frame = 1
Query:   49 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNI-----SAVPWWN 483
            +PR   + + +S EE E +  LA P + ++TV D +TGK   +  R S   +L+               D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP    ++     +AV W+N
Sbjct:  316 KPRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYESPVVSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFPEVGASVWPKKGTAVFWYN 469          
BLAST of CX291816 vs. ExPASy Swiss-Prot
Match: P4HA1_PONAB (Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 1
Query:   49 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNI-----SAVPWWN 483
            +PR   +H+ +S  E E + +LA P +R++T+ +  TG  +    R S   +L+               D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP    ++     +AV W+N
Sbjct:  334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFPEVGASVWPKKGTAVFWYN 487          
BLAST of CX291816 vs. ExPASy Swiss-Prot
Match: P4HA1_MOUSE (Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 1
Query:   49 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNI-----SAVPWWN 483
            +PR   +H+ +S  E E + +LA P +R++T+ +  TG  +    R S   +L+               D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP    ++     +AV W+N
Sbjct:  334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFPEVGASVWPKKGTAVFWYN 487          
BLAST of CX291816 vs. ExPASy Swiss-Prot
Match: P4HA1_HUMAN (Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 1
Query:   49 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNI-----SAVPWWN 483
            +PR   +H+ +S  E E + +LA P +R++T+ +  TG  +    R S   +L+               D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP    ++     +AV W+N
Sbjct:  334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFPEVGASVWPKKGTAVFWYN 487          
BLAST of CX291816 vs. ExPASy Swiss-Prot
Match: P4HA1_BOVIN (Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.991e-17
Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 1
Query:   49 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNI-----SAVPWWN 483
            +PR   +H+ +S  E E + +LA P +R++T+ +  TG  +    R S   +L+               D T L +   E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP    ++     +AV W+N
Sbjct:  334 KPRIIRFHDIISDAEIEVVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVLAGGATVFPEVGASVWPKKGTAVFWYN 487          
BLAST of CX291816 vs. ExPASy Swiss-Prot
Match: P4HA2_CHICK (Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.452e-16
Identity = 55/154 (35.71%), Postives = 79/154 (51.30%), Query Frame = 1
Query:   46 WE-PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--KNGGQRMATVLMYLSDVEEGGETVFPNAQGNI-----SAVPWWN 483
            W+ P    Y++ +S EE E +  LA P + ++TV D  TG    +  R S  ++L                  T L ++  E LQV +Y  G +YEPHFD+    F++  K+ G R+AT L Y+SDVE GG TVFP+    I     +AV W+N
Sbjct:  334 WDSPHIVRYYDVMSDEEIEKIKQLAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVAKVNQRMQQITGLTVKTAELLQVANYGMGGQYEPHFDFSRRPFDSTLKSEGNRLATFLNYMSDVEAGGATVFPDFGAAIWPKKGTAVFWYN 487          
BLAST of CX291816 vs. ExPASy Swiss-Prot
Match: P4HA2_HUMAN (Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.519e-16
Identity = 60/175 (34.29%), Postives = 83/175 (47.43%), Query Frame = 1
Query:   10 GGRAEQWV-----EVISWE-PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNI-----SAVPWWNEL 489
            G RA Q +     E   W+ P    Y++ +S EE E +  +A P + ++TV D  TG    +  R S  ++L                  T L ++  E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDVE GG TVFP+    I     +AV W+N L
Sbjct:  316 GNRAPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSRNDERDTFKHLGTGNRVATFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLL 490          
BLAST of CX291816 vs. ExPASy Swiss-Prot
Match: P4HA2_MOUSE (Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 55/158 (34.81%), Postives = 77/158 (48.73%), Query Frame = 1
Query:   46 WE-PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNI-----SAVPWWNEL 489
            W+ P    Y++ +S EE E +  +A P + ++TV D  TG    +  R S  ++L                  T L ++  E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDVE GG TVFP+    I     +AV W+N L
Sbjct:  335 WDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVATFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLL 492          
The following BLAST results are available for this feature:
BLAST of CX291816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
P4HA1_RAT6.965e-1935.06Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus nor... [more]
P4HA2_CAEEL5.896e-1836.17Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabd... [more]
P4HA1_CHICK1.006e-1735.06Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gal... [more]
P4HA1_PONAB2.241e-1733.77Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abel... [more]
P4HA1_MOUSE2.241e-1733.77Prolyl 4-hydroxylase subunit alpha-1 OS=Mus muscul... [more]
P4HA1_HUMAN2.241e-1733.77Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapie... [more]
P4HA1_BOVIN4.991e-1733.77Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus... [more]
P4HA2_CHICK1.452e-1635.71Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gal... [more]
P4HA2_HUMAN5.519e-1634.29Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapie... [more]
P4HA2_MOUSE9.413e-1634.81Prolyl 4-hydroxylase subunit alpha-2 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC04005D08SK FlavFr1 Citrus clementina cDNA clone C04005D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291816 ID=CX291816; Name=CX291816; organism=Citrus clementina; type=EST; length=556bp
TCGGCACGAGGAGGGAGAGCAGAGCAATGGGTTGAGGTGATCTCTTGGGA
GCCTCGAGCTTTTGTTTATCATAATTTCTTGAGCAAGGAGGAGTGCGAGT
ACCTAATCAATCTTGCCACACCTCATATGAGAAAGTCGACTGTTGTTGAT
AGTGATACTGGCAAGAGCAAAGATAGCAGGGTTCGGACAAGTTCTGGAAC
ATTTCTTGCTAGAGGACGAGACAAAATTATTAGAGATATTGAGAAAAGGA
TTGCAGATTTCACTTTCTTACCTTTAGAGAATGGAGAAGGACTTCAAGTT
CTCCATTATGAAGCTGGACAAAAATATGAGCCTCACTTTGACTATTTCAT
GGATGAGTTCAACACCAAGAATGGGGGGCAACGCATGGCTACGGTGCTAA
TGTACCTCTCAGACGTTGAAGAAGGAGGTGAGACAGTATTTCCTAATGCC
CAAGGGAACATCAGTGCTGTGCCTTGGTGGAATGAATTATCTGAATGTGG
AAAGACAGGACTTTCTATTAAACCAAAAATGGGTGATGCATTGCTTTTCT
GGAGCA
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