CX291821

Overview
NameCX291821
Unique NameCX291821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX291821 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 56/154 (36.36%), Postives = 63/154 (40.91%), Query Frame = 2 
Query:    2 ATLSASAPFPTITLDLTQSPNPMQFLRGPSSSSTFPLPLHGYPQLLRYGPAAGMPNNMQLGQRH------------------ASMVETVTAAITSDPNFT-----------XXXXXXXXXXXXXXXXXXXXXXXXXMQPGSPQLPQSCTTFSTN 376
            ATLSASAPFPTITLDLT  P P+Q           P P      L +YGPAA +PN  Q+   +                    MV++V AAI  DPNFT                                        SPQLPQSCTTFSTN
Sbjct:  351 ATLSASAPFPTITLDLTNPPRPLQ-----------PPPQF----LSQYGPAAFLPNANQIRSMNNNNQQLLIPNLFGPQAPPREMVDSVRAAIAMDPNFTAALAAAISNIIGGGNNDNNNNTDINDNKVDAKSGGSSNGDSPQLPQSCTTFSTN 489
The following BLAST results are available for this feature:
BLAST of CX291821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WRK47_ARATH1.513e-1136.36Probable WRKY transcription factor 47 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC04005E02SK FlavFr1 Citrus clementina cDNA clone C04005E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291821 ID=CX291821; Name=CX291821; organism=Citrus clementina; type=EST; length=577bp
GGCAACTCTATCTGCTTCTGCACCATTTCCCACCATTACCCTTGACTTAA
CGCAGAGCCCAAACCCAATGCAATTCCTCCGGGGACCTTCTTCGTCGTCC
ACATTTCCTCTACCTTTGCATGGCTACCCACAACTTTTAAGGTACGGCCC
TGCTGCCGGAATGCCAAATAATATGCAATTAGGGCAACGCCATGCTTCAA
TGGTTGAGACGGTCACCGCAGCCATTACTTCCGACCCGAATTTCACAGCT
GCCTTAGCTGCAGCAATCTCAACGATAATTGGGAGCAATAACGGAAACAA
TGGTAATAACGGGACAAGCGGGATGCAGCCTGGCTCTCCACAGCTTCCTC
AATCTTGCACTACTTTCTCCACAAATTAACTTAACTAGGGCCCGCCCTAC
GCTATGCATAATATATAATCATTTTACATAATTAAGCTTATGGTGGTTTG
GCCCTTGAGAGAAGGAACCCAGGTTTGCTGGGGAAAGCAGCTTGCTAGGT
AGCTAGCTGGTAGATATAATTAAGAAGCTGCATTTTGAGCTATTGCTTCC
GATTTAGGGTTTCAGGCATTGGATAAC
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