CX291830

Overview
NameCX291830
Unique NameCX291830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291830 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.388e-35
Identity = 88/173 (50.87%), Postives = 112/173 (64.74%), Query Frame = -1
Query:  270 STSTSSPESKNQGSVET----AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGS-CGSILDGLV---------------GDTDDDEKKESSGGDLKLFGVWLKGERKKRAREETV-VCGGSHE-MKKVEFCAPYIK-------SSKVCN 701
            S+STSSP+SKN GSV+T    ++F DLSDEN KL++DN+ LSSEL QAKKQC+EL+ FL++YVKV PD INRIM QG+  GS L+ LV                D DD E  +  G  LKLFGV LK ++KKR  +E +  CGG  + MK V++  P++K       SSKVCN
Sbjct:  129 SSSTSSPDSKNPGSVDTPGKLSQFTDLSDENEKLKKDNQMLSSELVQAKKQCNELVAFLSQYVKVAPDMINRIMSQGTPSGSSLEELVKEVGGVKDLEEQGSYNDNDDKEDDDEKGDTLKLFGVLLKEKKKKRGPDENIETCGGRGKMMKTVDYNGPWMKMSSPAGESSKVCN 301          
BLAST of CX291830 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.087e-29
Identity = 85/160 (53.12%), Postives = 100/160 (62.50%), Query Frame = -1
Query:  270 STSTSSP-ESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDTDDDEKKESSGGD------------LKLFGVWLKGERKKRAREE-TVVCGGSH--EMKKVEFCAPYIKSSKVCN 701
            S+STSSP  SKN GSVE    ADLS EN KL+R+N  LSSELA AKKQ DEL+TFLT ++KV P+QI+++        I  G     + DE+ E  G D            LKLFGVWLKGERKKR R+E   V  GS   E+K V+F AP  KSSKVCN
Sbjct:  134 SSSTSSPGSSKNPGSVENM-VADLSGENEKLKRENNNLSSELAAAKKQRDELVTFLTGHLKVRPEQIDKM--------IKGGKFKPVESDEESECEGCDGGGGAEEGVGEGLKLFGVWLKGERKKRDRDEKNYVVSGSRMTEIKNVDFHAPLWKSSKVCN 284          
The following BLAST results are available for this feature:
BLAST of CX291830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HSF24_SOLPE8.388e-3550.87Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HSFB1_ARATH3.087e-2953.13Heat stress transcription factor B-1 OS=Arabidopsi... [more]
back to top
Properties
Property NameValue
Genbank descriptionC04005F11SK FlavFr1 Citrus clementina cDNA clone C04005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291830 ID=CX291830; Name=CX291830; organism=Citrus clementina; type=EST; length=701bp
TCGGCACGAGGGTTTTTTTTTTTTTTTTTTTTACTCAAGATATGACCATA
CACTCATATTATTGACCTGTACCTAGTAGTGCCTGGGTTTCGAGATCCAT
TTGCCTTTGATCTCCACCCCTGCTACATTATACAAAATAATTAAAACTAA
AAGACCATCAACATCCATCATACAAATTATACAAGAACAAACCATGAACC
ATGGCTATATCCTATAATCCCATCACACATTCAACTATTCAAGACAGAGA
TTTGTGTGCGCGGCTGTCAGTTGCAGACTTTGCTGCTTTTGATATACGGC
GCGCAAAACTCAACTTTCTTCATCTCATGAGACCCACCACATACGACAGT
TTCCTCGCGGGCGCGCTTCTTCCGTTCCCCTTTCAACCAGACCCCAAACA
GCTTCAAATCTCCACCGCTACTTTCTTTTTTTTCGTCATCATCAGTATCG
CCGACCAACCCATCGAGGATGGACCCACAGCTTCCTTGCCCCATGATGCG
ATTGATCTGGTCGGGCCCCACCTTGACGTACTCGGTCAGAAACGTAATTA
ACTCGTCGCACTGTTTCTTCGCCTGCGCCAGTTCGGAACTCAGTGTCTCG
TTGTCTCTTCTCAATTTCGCATTCTCGTCCGATAAGTCCGCGAACTTTGC
GGTCTCAACCGATCCCTGGTTCTTCGATTCCGGAGATGACGTGGACGTGG
A
back to top