CX291835

Overview
NameCX291835
Unique NameCX291835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig387 contig Ccv1_Contig387:1..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291835 vs. ExPASy Swiss-Prot
Match: DENR_NEUCR (Translation machinery-associated protein 22 OS=Neurospora crassa GN=tma-22 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.462e-12
Identity = 41/128 (32.03%), Postives = 60/128 (46.88%), Query Frame = 1
Query:  229 VLYCAVCSLPAEYCEFGPDLEKCKPWLIQNTPDLYPDL-AEELNSREADKVGEQLQSTGIXXXXXXXXKAEEVKHLPGGXXXXXXXXXXXXXXXXXXXXXCITTVKGLELFGVKLSDASKKLGKKFAT 609
            V+YC VCSLP EYCE+G  ++KC+ WL +N P +Y  + + E+   E   +  + Q   +        KAE  +                           +T+V GLE FG++L   +K  GKKFAT
Sbjct:    9 VVYCGVCSLPPEYCEYGGTVKKCQQWLEKNQPTMYSRIWSPEVLEAEMASLSVEAQERAMKDAKKKAAKAEAAEQKQADKRANSVVTIKRIERNKRKY---VTSVSGLEAFGLELKKVAKDFGKKFAT 133          
BLAST of CX291835 vs. ExPASy Swiss-Prot
Match: DENR_CHICK (Density-regulated protein OS=Gallus gallus GN=DENR PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 43/134 (32.09%), Postives = 61/134 (45.52%), Query Frame = 1
Query:  220 PVRVLYCAVCSLPAEYCEFGPDLEKCKPWLIQNTPDLYPDLAEELNSREADKVGEQLQSTGIXXXXXXXXKAEEVKHLPGG-----XXXXXXXXXXXXXXXXXXXXXCITTVKGLELFGVKLSDASKKLGKKFA 606
            P+RVLYC VCSLP EYCE+ PD+ KC+ WL +N PD +  L  E + ++   VGE   + G         + E+ K   GG                           +T V GL  F + L +A +   +KF+
Sbjct:   28 PLRVLYCGVCSLPTEYCEYMPDVTKCRQWLEKNFPDEFAKLTVENSPKQEAGVGEGQGTAG--------EEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFS 153          
BLAST of CX291835 vs. ExPASy Swiss-Prot
Match: DENR_CRYNE (Translation machinery-associated protein 22 OS=Cryptococcus neoformans GN=TMA22 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 49/144 (34.03%), Postives = 61/144 (42.36%), Query Frame = 1
Query:  199 VMAEKPQPVRVLYCAVCSLPAEYCEFGPDLEKCKPWLIQNTPDLYP------DLAEELNSREADKVGEQLQSTGIXXXXXXXXKAE-EVKHLPGGXXXXXXXXXXXXXXXXXXXXXCITTVKGLELFGVKLSDASKKLGKKFAT 609
            V     + V   YCAVCSLP EYCEFGP + KCK WL +   D Y        LA  + +   DK  E+L++           KAE E K                            T ++ LELFGV L  A+K+   KFAT
Sbjct:    5 VSGPSTKQVHPFYCAVCSLPTEYCEFGPSVSKCKAWLEEQDKDEYERVWGEGALASRIGTLSLDK-QEKLEADAAKLEKKAAKKAEAEAKKKEQTKIIIKRSERTKRKHQ--------THIQNLELFGVDLKKAAKQFAGKFAT 139          
The following BLAST results are available for this feature:
BLAST of CX291835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DENR_NEUCR3.462e-1232.03Translation machinery-associated protein 22 OS=Neu... [more]
DENR_CHICK1.718e-1132.09Density-regulated protein OS=Gallus gallus GN=DENR... [more]
DENR_CRYNE8.528e-1134.03Translation machinery-associated protein 22 OS=Cry... [more]
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Properties
Property NameValue
Genbank descriptionC04005G10SK FlavFr1 Citrus clementina cDNA clone C04005G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291835 ID=CX291835; Name=CX291835; organism=Citrus clementina; type=EST; length=611bp
ACTGATAAGATAGGTGCAATCCCAATTGTTTGTGGGTGAATCTAGAAAAG
GTGCCCAATTGCAGATTTGATGCCCGGACCGGCCCTCTAAATACCGGACC
GTTCAGGCTCTTTTGTCGAAGCGTGTCGTTTTGCTCTTCTTACAAAATTC
CCGTCACTCGGCAGTTGGCAAAGAGAGTAGTGGAGCTCTGTCTTTGAAGT
AATGGCGGAAAAACCGCAGCCGGTTCGCGTACTGTACTGTGCGGTGTGCA
GTTTACCGGCGGAGTACTGTGAATTCGGACCCGATCTCGAGAAATGCAAG
CCCTGGCTAATTCAAAACACACCGGACCTTTACCCCGATCTTGCCGAAGA
GTTAAATTCGAGGGAAGCCGATAAAGTCGGCGAGCAGTTACAATCAACTG
GCATTTCCTCTCCTGCTTCTTCAGCTCCTAAGGCAGAAGAAGTTAAACAC
CTTCCTGGTGGAAAGATAAAGAAAAAGGATAAGAAAGAAGTTGTTATCGA
AAAGGTTGTTCGTAACAAACGGAAATGTATCACTACAGTTAAAGGCCTGG
AACTTTTTGGTGTTAAACTTAGTGATGCTTCAAAGAAACTTGGGAAAAAG
TTTGCTACAGG
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