CX291879

Overview
NameCX291879
Unique NameCX291879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11354 contig Ccv1_Contig11354:177..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291879 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 8.897e-66
Identity = 111/175 (63.43%), Postives = 132/175 (75.43%), Query Frame = 3
Query:    6 SKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAI 530
            S++G+CG T  +C +GCQSQCSG                           RDLFE+LL HRND AC  +GFYTY+AF+AAA +F AFG TGNT+TRKRE+AAFL QTSHETTGGWPTAPDGP++WGYCFKQEQ  P DYCQPS +WPCAPG+KY+GRGPIQ+S+N+NYGPAG+AI
Sbjct:   51 SRWGWCGTTSDFCGDGCQSQCSGCGPTPTPTPPSPSDGVGSIVP------RDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAI 219          
BLAST of CX291879 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 4.416e-65
Identity = 114/175 (65.14%), Postives = 128/175 (73.14%), Query Frame = 3
Query:    6 SKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAI 530
            SKFG+CGNT  YC +GCQSQCS                            R +F  +LKHRN+ +C GKGFYTYDAFIAAA +F  FGTTG+T TRKREIAAFLAQTSHETTGGW +APDGPYAWGYC+ +EQG+PG YC PS QWPCA G+KY+GRGPIQISYNYNYG AGKAI
Sbjct:   39 SKFGWCGNTADYCGSGCQSQCSSTGDIGQLIT------------------RSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAI 195          
BLAST of CX291879 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 245.743 bits (626), Expect = 9.837e-65
Identity = 113/175 (64.57%), Postives = 131/175 (74.86%), Query Frame = 3
Query:    6 SKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAI 530
            S+FG+CG+TP YC +GCQSQCSG                           R LF+++L HRND ACQ KGFYTYDAF+AAA++F  FGTTG TDTRKRE+AAFLAQTSHETTGGW TAPDG +AWGYCFKQE+G   +YC PS QWPCAPGK Y+GRGPIQ+S+NYNYGPAG+AI
Sbjct:   38 SRFGWCGSTP-YCGDGCQSQCSGCGGGSTPVTPTPSGGGGVSSIVS----RALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAI 207          
BLAST of CX291879 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.285e-64
Identity = 111/175 (63.43%), Postives = 130/175 (74.29%), Query Frame = 3
Query:    6 SKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAI 530
            S+FG+CG+T  YC +GCQSQC+G                           R LF+++L HRND ACQ KGFYTYDAF+AAA +F  FGTTG+TDTRKRE+AAFLAQTSHETTGGW TAPDG +AWGYCFKQE+G   +YC PS QWPCAPGK Y+GRGPIQ+S+NYNYGPAG+AI
Sbjct:   38 SRFGWCGSTSDYCGDGCQSQCAGCGGGGTPVTPTPTPSGGGGVSSIVS--RALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAI 210          
BLAST of CX291879 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 8.327e-64
Identity = 114/176 (64.77%), Postives = 128/176 (72.73%), Query Frame = 3
Query:    6 SKFGFCGNTPAYCTNG-CQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAI 530
            SKFG+CGNT  YC  G CQSQC G                             +F+Q+LKHRND ACQGKGFY+Y+AFI AA SF  FGT+G+T  RKREIAAF AQTSHETTGGW TAPDGPYAWGYC+ +EQG+PGDYC PS QWPCAPG+KYFGRGPIQIS+NYNYGP G+AI
Sbjct:   42 SKFGWCGNTNDYCGPGNCQSQCPGGPTPPGGGDLGSIISS------------SMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI 205          
BLAST of CX291879 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 8.327e-64
Identity = 114/176 (64.77%), Postives = 128/176 (72.73%), Query Frame = 3
Query:    6 SKFGFCGNTPAYCTNG-CQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKGFYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAI 530
            SKFG+CGNT  YC  G CQSQC G                             +F+Q+LKHRND ACQGKGFY+Y+AFI AA SF  FGT+G+T  RKREIAAF AQTSHETTGGW TAPDGPYAWGYC+ +EQG+PGDYC PS QWPCAPG+KYFGRGPIQIS+NYNYGP G+AI
Sbjct:   42 SKFGWCGNTNDYCGPGNCQSQCPGGPTPTPPTPPGGGDLGSIISS-------SMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI 210          
BLAST of CX291879 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.855e-63
Identity = 114/177 (64.41%), Postives = 127/177 (71.75%), Query Frame = 3
Query:    6 SKFGFCGNTPAYCTNG-CQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKG-FYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAI 530
            SKFG+CGNT  YC  G CQSQC G                             +F+Q+L HRND ACQGK  FY+Y+AF+ AA SF  FGTTG+   RKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCF +EQG+PGDYC PS QWPCAPG+KYFGRGPIQIS+NYNYGP G+AI
Sbjct:   41 SKFGWCGNTNEYCGPGNCQSQCPGGPGPSGDLGGVIS--------------NSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI 203          
BLAST of CX291879 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.855e-63
Identity = 115/177 (64.97%), Postives = 127/177 (71.75%), Query Frame = 3
Query:    6 SKFGFCGNTPAYCTNG-CQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKG-FYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAI 530
            S FG+CGNT  YC  G CQSQC                               +F+Q+LKHRND ACQGK  FY+Y+AFI AA SFG FGTTG+T  RKREIAAF AQTSHETTGGWPTAPDGPYAWGYCF +EQG+PGDYC PS QWPCAPG+KYFGRGPIQIS+NYNYGP G+AI
Sbjct:   37 SNFGWCGNTNDYCGPGKCQSQCPSGPSPKPPTPGPGPSGGDIGSVIS----NSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI 209          
BLAST of CX291879 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.164e-63
Identity = 114/177 (64.41%), Postives = 128/177 (72.32%), Query Frame = 3
Query:    6 SKFGFCGNTPAYCTNG-CQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKG-FYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAI 530
            SKFG+CG+T  YC  G CQSQC G                             +F+Q+L HRND ACQGKG FY+Y+AFI+AA SF  FGTTG+   RKREIAAF AQTSHETTGGWPTAPDGPYAWGYCF +EQG+PGDYC PS QWPCAPG+KYFGRGPIQIS+NYNYGP G+AI
Sbjct:   37 SKFGWCGDTNDYCGPGNCQSQCPGGPGPSGDLGGVIS--------------NSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI 199          
BLAST of CX291879 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 4.133e-63
Identity = 114/177 (64.41%), Postives = 128/177 (72.32%), Query Frame = 3
Query:    6 SKFGFCGNTPAYCTNG-CQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACQGKG-FYTYDAFIAAANSFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAI 530
            SKFG+CGNT  YC  G CQSQC G                             +F+Q+L HRND ACQGK  FY+Y+AFI+AA SF  FGTTG+   RKREIAAFLAQTSHETTGGWP+APDGPYAWGYCF +EQG+PGDYC PS QWPCAPG+KYFGRGPIQIS+NYNYGP G+AI
Sbjct:   37 SKFGWCGNTNDYCGPGNCQSQCPGGPGPSGDLGGVIS--------------NSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI 199          
The following BLAST results are available for this feature:
BLAST of CX291879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI2_ORYSJ8.897e-6663.43Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_VITVI4.416e-6565.14Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI1_HORVU9.837e-6564.5726 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIA_SECCE1.285e-6463.43Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_TOBAC8.327e-6464.77Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC8.327e-6464.77Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIC_SOLLC1.855e-6364.41Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI4_SOLTU1.855e-6364.97Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_SOLTU3.164e-6364.41Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU4.133e-6364.41Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC04006E01SK FlavFr1 Citrus clementina cDNA clone C04006E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291879 ID=CX291879; Name=CX291879; organism=Citrus clementina; type=EST; length=530bp
CGAGGAGCAAATTTGGCTTCTGCGGCAACACTCCTGCTTATTGCACCAAT
GGCTGCCAAAGCCAGTGCAGTGGGTCACCCTCACCCACGCCGACTAATCC
GACTCCCGTACCTGCTCCAAGCGGCGGCGGGAACAATATCGGTTCACTAA
TTAGCAGGGACCTATTTGAACAGCTGTTGAAGCATCGTAATGATGCTGCT
TGCCAAGGAAAAGGTTTTTACACTTACGACGCTTTCATCGCTGCCGCCAA
TTCCTTTGGTGCCTTCGGAACAACCGGTAACACCGATACTCGCAAAAGAG
AAATCGCGGCCTTTTTGGCTCAAACTTCACATGAAACTACAGGTGGCTGG
CCTACTGCGCCCGATGGTCCATATGCATGGGGATATTGCTTCAAGCAGGA
GCAAGGAAACCCTGGAGATTATTGTCAACCAAGTCAACAATGGCCATGTG
CACCTGGGAAAAAGTATTTTGGCCGAGGTCCCATCCAGATTTCATACAAC
TACAACTACGGTCCAGCAGGAAAAGCCATA
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