CX291912

Overview
NameCX291912
Unique NameCX291912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length372
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11050 contig Ccv1_Contig11050:491..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291912 vs. ExPASy Swiss-Prot
Match: MAOX_POPTR (NADP-dependent malic enzyme OS=Populus trichocarpa PE=2 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 1.127e-59
Identity = 108/123 (87.80%), Postives = 120/123 (97.56%), Query Frame = 3
Query:    3 SLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFA 371
            SLK+KGKVL+VL+NWP+K+IQVIVVTDGERILGLGDLGC G+GIPVGKLSLYTALGG+RPSACLPVTIDVGTNNE+LL DEFYIGLRQ+RA GQEY+ELLHEFMTAVKQNYGE++LIQFEDFA
Sbjct:  163 SLKEKGKVLDVLKNWPQKSIQVIVVTDGERILGLGDLGCQGIGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEQLLKDEFYIGLRQRRATGQEYSELLHEFMTAVKQNYGEKVLIQFEDFA 285          
BLAST of CX291912 vs. ExPASy Swiss-Prot
Match: MAOC_FLAPR (NADP-dependent malic enzyme, chloroplastic OS=Flaveria pringlei GN=MODA PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.923e-59
Identity = 107/123 (86.99%), Postives = 120/123 (97.56%), Query Frame = 3
Query:    3 SLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFA 371
            SLKDKGKVLE+L+NWP+K IQVIVVTDGERILGLGDLGC GMGIPVGKLSLYTALGGIRPSACLP+TIDVGTNNEK+L+DEFYIGLRQ+RA G+EYAEL++EFM+AVKQNYGE++LIQFEDFA
Sbjct:  219 SLKDKGKVLEILKNWPQKKIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEKMLNDEFYIGLRQRRASGKEYAELMNEFMSAVKQNYGEKVLIQFEDFA 341          
BLAST of CX291912 vs. ExPASy Swiss-Prot
Match: MAOX_PHAVU (NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 2.126e-58
Identity = 106/123 (86.18%), Postives = 117/123 (95.12%), Query Frame = 3
Query:    3 SLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFA 371
            SLK+KGK+LEVL+NWPEK+IQVIVVTDGERILGLGDLGC GMGIPVGKLSLYTALGG+RPS+CLPVTIDVGTNNEKLL+DEFYIGLRQ+RA GQEYA  L EFM AVKQNYGE++L+QFEDFA
Sbjct:  161 SLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPVTIDVGTNNEKLLNDEFYIGLRQRRATGQEYATFLDEFMRAVKQNYGEKVLVQFEDFA 283          
BLAST of CX291912 vs. ExPASy Swiss-Prot
Match: MAOC_ORYSJ (NADP-dependent malic enzyme, chloroplastic OS=Oryza sativa subsp. japonica GN=ME6 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 3.626e-58
Identity = 106/123 (86.18%), Postives = 118/123 (95.93%), Query Frame = 3
Query:    3 SLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFA 371
            SLKDKGKVL+VLRNWPE+NIQVIVVTDGERILGLGDLGC GMGIPVGKLSLYTALGG+RPSACLP+TIDVGTNNE+LL+DEFYIGLRQ+RA G+EY EL+ EFM+AVKQ YGE++LIQFEDFA
Sbjct:  211 SLKDKGKVLDVLRNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEQLLNDEFYIGLRQRRATGKEYHELMEEFMSAVKQIYGEKVLIQFEDFA 333          
BLAST of CX291912 vs. ExPASy Swiss-Prot
Match: MAOC_FLATR (NADP-dependent malic enzyme, chloroplastic OS=Flaveria trinervia GN=MOD1 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 6.185e-58
Identity = 106/124 (85.48%), Postives = 118/124 (95.16%), Query Frame = 3
Query:    3 SLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLL-DDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFA 371
            SLKDKG++LE+L+NWP K IQVIVVTDGERILGLGDLGC GMGIPVGKL+LYTALGG+RPSACLP+TIDVGTNNEKLL DDEFYIGL+QKRA GQEYAEL++EFM+AVKQNYGE +LIQFEDFA
Sbjct:  219 SLKDKGRILEILKNWPHKKIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLLNDDEFYIGLKQKRAAGQEYAELMNEFMSAVKQNYGENLLIQFEDFA 342          
BLAST of CX291912 vs. ExPASy Swiss-Prot
Match: MAOX_MESCR (NADP-dependent malic enzyme OS=Mesembryanthemum crystallinum GN=MOD1 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.055e-57
Identity = 103/123 (83.74%), Postives = 117/123 (95.12%), Query Frame = 3
Query:    3 SLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFA 371
            SLKDKG++LE+LRNWPEK IQVIVVTDGERILGLGDLGC GMGIPVGKLSLY+ALGG+ PSACLP+T+DVGTNN+KLLDDEFYIGL+QKRA G+EYAE + EFM+AVKQNYGE+IL+QFEDFA
Sbjct:  157 SLKDKGRILELLRNWPEKKIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGVCPSACLPITLDVGTNNQKLLDDEFYIGLKQKRATGEEYAEFVQEFMSAVKQNYGEKILVQFEDFA 279          
BLAST of CX291912 vs. ExPASy Swiss-Prot
Match: MAOX_VITVI (NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.166e-56
Identity = 102/123 (82.93%), Postives = 116/123 (94.31%), Query Frame = 3
Query:    3 SLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFA 371
            SLK+KGK+LEVL+NWPE+ IQVIVVTDGERILGLGDLGC GMGIPVGKLSLYTALGG+RPSACLP+TIDVGTNNEKLL +EFYIGL+Q+RA G+EY+E L EFM+ VKQNYGE++LIQFEDFA
Sbjct:  163 SLKEKGKILEVLKNWPERRIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLANEFYIGLKQRRATGKEYSEFLQEFMSPVKQNYGEKVLIQFEDFA 285          
BLAST of CX291912 vs. ExPASy Swiss-Prot
Match: MAOC_MAIZE (NADP-dependent malic enzyme, chloroplastic OS=Zea mays GN=MOD1 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 9.875e-56
Identity = 103/123 (83.74%), Postives = 113/123 (91.87%), Query Frame = 3
Query:    3 SLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFA 371
            SLKDKGKVLEVLRNWP +NIQVI VTDGERILGLGDLGC GMGIPVGKL+LYTALGG+ PS CLP+TIDVGTNNE LL+DEFYIGLRQKRA G+EY EL+ EFM+AVKQ YGE++LIQFEDFA
Sbjct:  208 SLKDKGKVLEVLRNWPHRNIQVICVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVDPSVCLPITIDVGTNNEFLLNDEFYIGLRQKRATGEEYDELIEEFMSAVKQFYGEKVLIQFEDFA 330          
BLAST of CX291912 vs. ExPASy Swiss-Prot
Match: MAOC_SOLLC (NADP-dependent malic enzyme, chloroplastic (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 7.077e-54
Identity = 103/123 (83.74%), Postives = 112/123 (91.06%), Query Frame = 3
Query:    3 SLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFA 371
            SLK+KGK+ EVL+NWPEK IQVIVVTDGERILGLGDLGC GMGIPVGKLSLY+ALGGIRPSACLPVTIDVG    K +DDEFYIGLRQ+RA GQEY+ELL EFM AVKQNYGE++LIQFEDFA
Sbjct:  147 SLKEKGKIHEVLKNWPEKKIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGIRPSACLPVTIDVG-QTMKFVDDEFYIGLRQRRATGQEYSELLDEFMYAVKQNYGEKVLIQFEDFA 268          
BLAST of CX291912 vs. ExPASy Swiss-Prot
Match: MAON_MOUSE (NADP-dependent malic enzyme, mitochondrial OS=Mus musculus GN=Me3 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.789e-42
Identity = 79/123 (64.23%), Postives = 96/123 (78.05%), Query Frame = 3
Query:    3 SLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFA 371
            ++ DKG +  +L +WPE NI+ +VVTDGERILGLGDLGC+GMGIPVGKL+LYTA GG+ P  CLPV +DVGTNNE+LL D  YIGL+ +R  G+EY +LL EFM AV   +G   LIQFEDFA
Sbjct:  161 TIHDKGHIATMLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNEELLRDPLYIGLKHQRVRGEEYDDLLDEFMQAVTDKFGINCLIQFEDFA 283          
The following BLAST results are available for this feature:
BLAST of CX291912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MAOX_POPTR1.127e-5987.80NADP-dependent malic enzyme OS=Populus trichocarpa... [more]
MAOC_FLAPR1.923e-5986.99NADP-dependent malic enzyme, chloroplastic OS=Flav... [more]
MAOX_PHAVU2.126e-5886.18NADP-dependent malic enzyme OS=Phaseolus vulgaris ... [more]
MAOC_ORYSJ3.626e-5886.18NADP-dependent malic enzyme, chloroplastic OS=Oryz... [more]
MAOC_FLATR6.185e-5885.48NADP-dependent malic enzyme, chloroplastic OS=Flav... [more]
MAOX_MESCR1.055e-5783.74NADP-dependent malic enzyme OS=Mesembryanthemum cr... [more]
MAOX_VITVI1.166e-5682.93NADP-dependent malic enzyme OS=Vitis vinifera PE=2... [more]
MAOC_MAIZE9.875e-5683.74NADP-dependent malic enzyme, chloroplastic OS=Zea ... [more]
MAOC_SOLLC7.077e-5483.74NADP-dependent malic enzyme, chloroplastic (Fragme... [more]
MAON_MOUSE2.789e-4264.23NADP-dependent malic enzyme, mitochondrial OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionC04006H09SK FlavFr1 Citrus clementina cDNA clone C04006H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291912 ID=CX291912; Name=CX291912; organism=Citrus clementina; type=EST; length=372bp
TCAGTTTGAAGGATAAGGGCAAGGTTCTTGAGGTATTGAGGAACTGGCCT
GAGAAGAATATTCAAGTCATTGTTGTCACTGATGGGGAGCGGATTCTAGG
ACTAGGAGATCTCGGTTGTCACGGAATGGGAATACCCGTTGGCAAACTTT
CTTTATACACAGCACTTGGAGGAATTCGTCCTTCAGCTTGCTTGCCTGTA
ACCATTGATGTGGGGACAAACAATGAGAAGTTGTTGGATGATGAGTTCTA
CATTGGGCTCAGGCAGAAGAGGGCTATTGGACAGGAATATGCTGAACTGC
TACATGAATTCATGACAGCTGTGAAGCAGAATTATGGCGAGAGAATTCTC
ATTCAGTTTGAAGACTTTGCAA
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