CX291962

Overview
NameCX291962
Unique NameCX291962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length588
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13865 contig Ccv1_Contig13865:48..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291962 vs. ExPASy Swiss-Prot
Match: ISPH_MICAN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Microcystis aeruginosa (strain NIES-843) GN=ispH PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.350e-39
Identity = 71/120 (59.17%), Postives = 94/120 (78.33%), Query Frame = 1
Query:  226 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQF 585
            D K F+  L +SDNYNR+GFGHKEE ++ M  EY SD+I++++EN +    G+V + LA+++GFCWGVERAV +AYE R+ FP+E+IWITNEIIHNP+VN+RL  MAV  IPVE G+K F
Sbjct:    2 DTKSFKRTLQQSDNYNRKGFGHKEEVMDAMTNEYQSDLIQEIRENNYRLQRGDVTIYLAQAFGFCWGVERAVAMAYETRQHFPQERIWITNEIIHNPSVNQRLRSMAVGFIPVENGQKDF 121          
BLAST of CX291962 vs. ExPASy Swiss-Prot
Match: ISPH_CYAA5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 8.360e-37
Identity = 69/120 (57.50%), Postives = 93/120 (77.50%), Query Frame = 1
Query:  226 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQF 585
            D K F+ +L +S+NY+R+GFGH+ E +  MN EY S +I+K++EN +++  G+V +KLAE++GFCWGVERAV +AYE R+ FP+EKIWITNEIIHNP+VN+RL EM V  I V  G K F
Sbjct:    2 DTKAFKRSLQQSNNYHRKGFGHETEVMGTMNTEYQSSLIQKIRENNYQWQEGDVTIKLAEAFGFCWGVERAVAMAYETRQHFPQEKIWITNEIIHNPSVNQRLLEMNVGFIEVINGSKDF 121          
BLAST of CX291962 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispH PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.426e-36
Identity = 68/120 (56.67%), Postives = 90/120 (75.00%), Query Frame = 1
Query:  226 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQF 585
            D K F+ +L  S+NY R+GFGHK+E   +M  EY S +I+++++N +E T G+V + LAE++GFCWGVERAV +AYE RK FP EKIW+TNEIIHNP+VN RL+EM V  I V +G K F
Sbjct:    2 DTKAFKRSLNHSENYYRQGFGHKDEVAGMMTSEYQSSLIQEIRDNNYELTRGDVTIYLAEAFGFCWGVERAVAMAYETRKHFPTEKIWVTNEIIHNPSVNNRLKEMNVHFIEVVDGDKDF 121          
BLAST of CX291962 vs. ExPASy Swiss-Prot
Match: ISPH_ACAM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.177e-36
Identity = 65/121 (53.72%), Postives = 94/121 (77.69%), Query Frame = 1
Query:  226 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE-EGKKQF 585
            D K F+ +L +S+ Y+R+GFGH+EE   L+  EY S +I++++ NG+    G+V + LAE++GFCWGVERA+ +AYE R+QFP+E+IWITNEIIHNP+VNK L +M V+ IPV+ +G+K F
Sbjct:    2 DTKAFKRSLHKSEQYHRKGFGHEEEVTNLLQSEYNSKLIQQIRNNGYRLQQGDVTIHLAEAFGFCWGVERAIALAYETRRQFPQERIWITNEIIHNPSVNKNLRDMKVEFIPVQPDGQKDF 122          
BLAST of CX291962 vs. ExPASy Swiss-Prot
Match: ISPH_THEEB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.059e-35
Identity = 65/120 (54.17%), Postives = 91/120 (75.83%), Query Frame = 1
Query:  226 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQF 585
            D + F+ +L  S+NY+R+GFGH EE  + +  EY S +I++++ NG+ +  G+V ++LAE++GFCWGVERAV +AYE R  FP E+IWITNEIIHNP+VN+RL +MAV+ IPV  G K F
Sbjct:    2 DTRAFKRSLHSSENYHRKGFGHGEEVNQQLQGEYQSSLIQQIRANGYRWQQGDVTIRLAEAFGFCWGVERAVALAYETRTHFPTERIWITNEIIHNPSVNERLRQMAVEFIPVVNGVKDF 121          
BLAST of CX291962 vs. ExPASy Swiss-Prot
Match: ISPH_SYNR3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain RCC307) GN=ispH PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.059e-35
Identity = 68/120 (56.67%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  226 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQF 585
            D + F+ +L  S+ YNRRGFG  EE    + Q Y S++I+ ++ENG+E   G V ++LAE++GFCWGVERAV IAYE R+ +P E+IWITNEIIHNP+VN  L EM V  IPVEEG K F
Sbjct:    2 DTRAFKRSLHHSERYNRRGFGRAEEVAGSLEQAYQSELIQSIRENGYELREGRVTIRLAEAFGFCWGVERAVAIAYETRRHYPTERIWITNEIIHNPSVNAHLVEMNVLFIPVEEGVKDF 121          
BLAST of CX291962 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7424) GN=ispH PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.689e-35
Identity = 61/120 (50.83%), Postives = 94/120 (78.33%), Query Frame = 1
Query:  226 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQF 585
            D K F+ +L +S+NY+R+GFG ++E + +MN EY S +I++++ N +  T G+V ++LAE++GFCWGVERAV ++YE R+ FP ++IW+TNE+IHNP+VN+RL +M V+ IPV E +K F
Sbjct:    2 DTKAFKRSLQQSENYHRKGFGQEDEAMGVMNSEYQSSLIQEIRNNNYRLTQGDVTIRLAEAFGFCWGVERAVAMSYETRQHFPNQRIWLTNEVIHNPSVNQRLRDMKVEFIPVIEDQKDF 121          
BLAST of CX291962 vs. ExPASy Swiss-Prot
Match: ISPH_ANAVT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.587e-35
Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 1
Query:  226 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQF 585
            D K F+  L  S+NYNR+GFGH+ E    +  EY S +I+++++  +    G+V ++LA+++GFCWGVERAV +AYE RK FP E+IWITNEIIHNP+VN+R++EM V  IPVE G K F
Sbjct:    2 DTKTFKRTLQHSENYNRKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWITNEIIHNPSVNQRMQEMQVGFIPVEAGNKDF 121          
BLAST of CX291962 vs. ExPASy Swiss-Prot
Match: ISPH_ANASP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena sp. (strain PCC 7120) GN=ispH PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.587e-35
Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 1
Query:  226 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQF 585
            D K F+  L  S+NYNR+GFGH+ E    +  EY S +I+++++  +    G+V ++LA+++GFCWGVERAV +AYE RK FP E+IWITNEIIHNP+VN+R++EM V  IPVE G K F
Sbjct:    2 DTKTFKRTLQHSENYNRKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWITNEIIHNPSVNQRMQEMQVGFIPVEAGNKDF 121          
BLAST of CX291962 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPX (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH8102) GN=ispH PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.825e-35
Identity = 66/120 (55.00%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  226 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQF 585
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG++ + G + V+LAE++GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN  L EM VQ IPVE+G K F
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAESLEQAYQSGLIGTIRDNGYKLSHGRLTVRLAEAFGFCWGVERAVAMAYETRKHYPAERLWITNEIIHNPSVNDHLREMDVQFIPVEQGVKDF 121          
The following BLAST results are available for this feature:
BLAST of CX291962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_MICAN2.350e-3959.174-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAA58.360e-3757.504-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP21.426e-3656.674-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ACAM13.177e-3653.724-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEEB2.059e-3554.174-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNR32.059e-3556.674-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP72.689e-3550.834-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANAVT4.587e-3553.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANASP4.587e-3553.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPX7.825e-3555.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC04007E04SK FlavFr1 Citrus clementina cDNA clone C04007E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291962 ID=CX291962; Name=CX291962; organism=Citrus clementina; type=EST; length=588bp
ACGCTGTCCGCCAACTTTTGCGCCGTCTCTTTCTCGCTGAATCCGTGAAT
CTCCCTCATCATGGCGACGACTCTGCAGTTCTGCCGTGTTTGCGCGCGAA
CTGACATAGGTTCGCGCCATAATAATCGCTCCGGAGCGCTGGCTCCGCCG
CGCCGGAGGCCTGTGATCGTCAGGTGCTCCGGTGAAAAATCGACGAGCTC
GGCGGCGGCTATTGGTGCCGAATTTGACGCGAAACTGTTTCGGCATAACT
TGACGAGAAGTGATAATTACAATCGGAGAGGATTTGGCCACAAGGAAGAG
ACTTTGGAGCTCATGAATCAGGAGTACACAAGTGATATTATAAAGAAATT
GAAGGAGAATGGATTTGAGTATACTTGGGGAAATGTTAAGGTGAAGCTGG
CCGAATCATATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGCAGATTGCT
TATGAAGCAAGAAAACAGTTTCCCGAGGAGAAGATCTGGATTACCAATGA
AATCATACACAATCCAACTGTTAATAAGCGGTTGGAGGAGATGGCAGTTC
AAAATATACCTGTTGAGGAAGGAAAGAAGCAATTTGAT
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