CX292117

Overview
NameCX292117
Unique NameCX292117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig480 contig Ccv1_Contig480:330..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292117 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.155e-18
Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = 2
Query:    2 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN---------------KQAQPDPNQWNAGY 277
            NNTTVF+G L S+VT++ LR  F  +G +V+VKIP GK CGFVQ+ DR  AE A+  + G  +    +RLSWGRS                  +Q QP   Q N GY
Sbjct:  311 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRSAKQTALLQQAMLSNSLQVQQQQPGLQQPNYGY 417          
BLAST of CX292117 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.500e-17
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 2
Query:    5 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPN 259
            N+TVFVG L   V++E L+ LF  +G++V+VKIP GK CGFVQF +R  AE A+  L G  LG   IRLSWGR+  N  A P  N
Sbjct:  302 NSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN-QNPIAAPALN 385          
BLAST of CX292117 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.085e-15
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 2
Query:    5 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQG 295
            NTTVFVG L    T+  LR LF  +G +++V+IP GK CGFV+F  R  AE +++ L G  +GG  IRLSWGR PS+  A+ +     A  Y  + G
Sbjct:  359 NTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR-PSSSNAKTNSTIMGASQYMSSNG 454          
BLAST of CX292117 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.458e-14
Identity = 33/74 (44.59%), Postives = 55/74 (74.32%), Query Frame = 2
Query:    5 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 226
            NTTVFVG L S ++++ L+  F  +G+++++KIP GK CGFVQ++++S AE+A+  + G  +G  +IRL+WG +
Sbjct:  296 NTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369          
The following BLAST results are available for this feature:
BLAST of CX292117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NAM8_YEAST5.155e-1843.93Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
YG41_SCHPO1.500e-1752.94Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
NGR1_YEAST4.085e-1545.36Negative growth regulatory protein NGR1 OS=Sacchar... [more]
CSX1_SCHPO3.458e-1444.59RNA-binding post-transcriptional regulator csx1 OS... [more]
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Properties
Property NameValue
Genbank descriptionC04010F10SK FlavFr1 Citrus clementina cDNA clone C04010F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292117 ID=CX292117; Name=CX292117; organism=Citrus clementina; type=EST; length=592bp
AAATAATACAACGGTGTTTGTTGGTAATCTGGACTCTATTGTTACGGATG
AACATTTGAGAGAACTGTTCAGCCAATATGGGCAACTAGTACATGTGAAA
ATACCAGCAGGCAAGCGATGTGGATTTGTTCAATTTGCTGACAGAAGTTG
TGCAGAGGAAGCATTGAGAATGTTAAATGGAACTCAGTTGGGAGGACAAA
ATATCCGGCTATCATGGGGACGTAGTCCTTCAAACAAACAGGCTCAGCCA
GACCCAAACCAGTGGAATGCTGGATACTATGGATATGCCCAAGGTTATGA
GAATTATGGTTATGCGGCTGCTGCTCCGCAAGACCCTAGCATGTACTACG
GAGGATATCCAGGATATGGAAATTATCAGCAGCCCCAGCAACCACAGCAG
TAGGAAGTGGATATTGATGAGGAGTTTTTGTTTATGTGACTGCTTTTTAT
TGTAGCAGTAACTTAATGGTGTGATACTACTACAATGATCTTTCTTCCTG
TCCTCTCTGGAGGAAACCAGTTCAGGCTCTGTACCCTTATCTTTTTCTTA
ATATCGCTATGTGTTGTATGAACGTTCATTCTCATAAAATTT
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