CX292130

Overview
NameCX292130
Unique NameCX292130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX292130_ssr137 microsatellite CX292130_ssr137:137..146. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7998 contig Ccv1_Contig7998:134..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX292130 vs. ExPASy Swiss-Prot
Match: HMCS_ARATH (Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 1.477e-62
Identity = 115/128 (89.84%), Postives = 122/128 (95.31%), Query Frame = 3
Query:  201 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 584
            MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQ+C+AFC+E+EDVISMS  AVT+L EKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTAAL NCV
Sbjct:    1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTSLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTAALLNCV 128          
BLAST of CX292130 vs. ExPASy Swiss-Prot
Match: HMCSA_DICDI (Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum GN=hgsA PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.878e-41
Identity = 78/129 (60.47%), Postives = 100/129 (77.52%), Query Frame = 3
Query:  198 TMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 584
            T  +N+GI  +++YFP T V QE LE  DG S+GKYT+GLGQ  MAFC + ED+ S+SL AV NL++K+ +DP  IGRLEVG+ETVIDKSKS+KT LM +F K GNT I+G+D+ NACYGGT+AL N +
Sbjct:    2 TKPENIGIHGIEVYFPSTYVAQEDLEKFDGVSQGKYTLGLGQTNMAFCGDREDIYSLSLNAVNNLMDKFNVDPNSIGRLEVGTETVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACYGGTSALHNAL 130          
BLAST of CX292130 vs. ExPASy Swiss-Prot
Match: HMCS1_CHICK (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Gallus gallus GN=HMGCS1 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.541e-40
Identity = 78/126 (61.90%), Postives = 98/126 (77.78%), Query Frame = 3
Query:  207 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 584
            K+VGI+A++IYFP   V Q  LE +DG   GKYTIGLGQ  M FCS+ ED+ S+ LT V  L+E+  +    IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTD+EG+D+TNACYGGTAALFN +
Sbjct:   15 KDVGIVALEIYFPSQYVDQTELEKYDGVDAGKYTIGLGQSKMGFCSDREDINSLCLTVVQKLMERNSLSYDCIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAALFNAI 140          
BLAST of CX292130 vs. ExPASy Swiss-Prot
Match: HMCS1_PONAB (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii GN=HMGCS1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.040e-40
Identity = 78/126 (61.90%), Postives = 100/126 (79.37%), Query Frame = 3
Query:  207 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 584
            K+VGI+A++IYFP   V Q  LE +DG + GKYTIGLGQ  M FC++ ED+ S+ +T V NL+E+  +    IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN V
Sbjct:   15 KDVGIVALEIYFPSQYVDQAELEKYDGVAAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAV 140          
BLAST of CX292130 vs. ExPASy Swiss-Prot
Match: HMCS1_HUMAN (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 7.888e-40
Identity = 78/126 (61.90%), Postives = 99/126 (78.57%), Query Frame = 3
Query:  207 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 584
            K+VGI+A++IYFP   V Q  LE +DG   GKYTIGLGQ  M FC++ ED+ S+ +T V NL+E+  +    IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN V
Sbjct:   15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAV 140          
BLAST of CX292130 vs. ExPASy Swiss-Prot
Match: HMCS1_CRIGR (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Cricetulus griseus GN=HMGCS1 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.346e-39
Identity = 78/126 (61.90%), Postives = 99/126 (78.57%), Query Frame = 3
Query:  207 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 584
            K+VGI+A++IYFP   V Q  LE +DG   GKYTIGLGQ  M FC++ ED+ S+ LT V NL+E+  +    IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN V
Sbjct:   15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQNLMERNSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAV 140          
BLAST of CX292130 vs. ExPASy Swiss-Prot
Match: HMCS1_MOUSE (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Mus musculus GN=Hmgcs1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.295e-39
Identity = 77/126 (61.11%), Postives = 99/126 (78.57%), Query Frame = 3
Query:  207 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 584
            K+VGI+A++IYFP   V Q  LE +DG   GKYTIGLGQ  M FC++ ED+ S+ LT V  L+E++ +    IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN V
Sbjct:   15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQKLMERHSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAV 140          
BLAST of CX292130 vs. ExPASy Swiss-Prot
Match: HMCS1_RAT (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Rattus norvegicus GN=Hmgcs1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.678e-39
Identity = 77/126 (61.11%), Postives = 98/126 (77.78%), Query Frame = 3
Query:  207 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCV 584
            K+VGI+A++IYFP   V Q  LE +DG   GKYTIGLGQ  M FC++ ED+ S+ LT V  L+E+  +    IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN V
Sbjct:   15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQKLMERNSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAV 140          
BLAST of CX292130 vs. ExPASy Swiss-Prot
Match: HMCSB_DICDI (Hydroxymethylglutaryl-CoA synthase B OS=Dictyostelium discoideum GN=hgsB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.653e-38
Identity = 72/124 (58.06%), Postives = 98/124 (79.03%), Query Frame = 3
Query:  207 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFN 578
            K++GI A+DIYFP T V Q  L+ +D  S GKYTIGLGQ  M+F  + ED++SM++T+V  ++ KY ID + IGRLEVG+ET+IDKSKS+K+ +M +F+++GNT +EGVD+ NACYGGT ALFN
Sbjct:    5 KDIGICAIDIYFPQTYVNQSELKKYDKVSNGKYTIGLGQTNMSFVGDREDIVSMAMTSVKMMMSKYSIDYQSIGRLEVGTETIIDKSKSVKSSIMSLFQEYGNTSLEGVDTLNACYGGTNALFN 128          
BLAST of CX292130 vs. ExPASy Swiss-Prot
Match: HMCS_YEAST (Hydroxymethylglutaryl-CoA synthase OS=Saccharomyces cerevisiae GN=ERG13 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.645e-37
Identity = 76/128 (59.38%), Postives = 97/128 (75.78%), Query Frame = 3
Query:  195 KTMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFN 578
            KT  +NVGI  + IY P  CV Q  LE  DG S+GKYTIGLGQ  M+F ++ ED+ SMSLT ++ L++ Y ID  +IGRLEVG+ET+IDKSKS+K+ LMQ+F +  NTD+EG+D+ NACYGGT ALFN
Sbjct:   43 KTRPQNVGIKGIQIYIPTQCVNQSELEKFDGVSQGKYTIGLGQTNMSFVNDREDIYSMSLTVLSKLIKSYNIDTNKIGRLEVGTETLIDKSKSVKSVLMQLFGE--NTDVEGIDTLNACYGGTNALFN 168          
The following BLAST results are available for this feature:
BLAST of CX292130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
HMCS_ARATH1.477e-6289.84Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis ... [more]
HMCSA_DICDI1.878e-4160.47Hydroxymethylglutaryl-CoA synthase A OS=Dictyostel... [more]
HMCS1_CHICK3.541e-4061.90Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_PONAB6.040e-4061.90Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_HUMAN7.888e-4061.90Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_CRIGR1.346e-3961.90Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_MOUSE2.295e-3961.11Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_RAT6.678e-3961.11Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCSB_DICDI5.653e-3858.06Hydroxymethylglutaryl-CoA synthase B OS=Dictyostel... [more]
HMCS_YEAST1.645e-3759.38Hydroxymethylglutaryl-CoA synthase OS=Saccharomyce... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04010H03SK FlavFr1 Citrus clementina cDNA clone C04010H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292130 ID=CX292130; Name=CX292130; organism=Citrus clementina; type=EST; length=585bp
AATTGGCACGAGGCTTTCTTTCTGTCTCTGAACGGCTAGCTGGGCTACGT
TTTACAAACTCAAGCCAACAGCAGAGCAAGAAAGAAAGCAAAGCAACGCA
AAACACATTTTCGTTGTTGTGCTGTTTTCTTGATACATATATATATTTAC
ATATATTTTTCATCTGGGCATTTTCTGTTTTTGAAAACCAGATAAAAACA
ATGGCAAAGAATGTTGGAATCCTCGCTATGGACATCTACTTCCCTCCTAC
TTGCGTCCAGCAGGAAGCTTTGGAGGCTCATGATGGTGCAAGCAAAGGAA
AATATACAATCGGGCTTGGACAGGAGTGCATGGCATTTTGTTCAGAGGTG
GAAGATGTCATCTCAATGAGCTTGACAGCTGTTACTAACCTCCTAGAGAA
GTATAAGATTGATCCAAAACAAATTGGTCGTCTCGAAGTAGGAAGCGAAA
CTGTGATAGACAAGAGCAAATCCATTAAGACTTTTTTGATGCAAATTTTT
GAGAAATTTGGAAATACTGACATTGAAGGTGTTGACTCGACCAATGCCTG
CTACGGAGGAACTGCTGCATTATTTAACTGTGTGA
back to top