CX292156

Overview
NameCX292156
Unique NameCX292156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX292156_ssr15 microsatellite CX292156_ssr15:15..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14950 contig Ccv1_Contig14950:1..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX292156 vs. ExPASy Swiss-Prot
Match: QCR7_SOLTU (Cytochrome b-c1 complex subunit 7 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.383e-43
Identity = 90/120 (75.00%), Postives = 100/120 (83.33%), Query Frame = 2 
Query:   53 ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRXXXXXXXXXXXXIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRTI 412
            +S  + L+DPKKN LAA HMKT+S RLRN+GLR            +KEAL+RLPREIVDARNQRL RAMDLSMKH+YLPEDLQAMQTPFRNYLQ+MLALVKRE AEREALGALPLYQRT+
Sbjct:    3 SSFSRWLVDPKKNPLAAIHMKTLSSRLRNYGLRHDDLYDPMYDLDVKEALNRLPREIVDARNQRLLRAMDLSMKHQYLPEDLQAMQTPFRNYLQEMLALVKRESAEREALGALPLYQRTL 122
The following BLAST results are available for this feature:
BLAST of CX292156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QCR7_SOLTU2.383e-4375.00Cytochrome b-c1 complex subunit 7 OS=Solanum tuber... [more]
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Properties
Property NameValue
Genbank descriptionC04011B10SK FlavFr1 Citrus clementina cDNA clone C04011B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292156 ID=CX292156; Name=CX292156; organism=Citrus clementina; type=EST; length=635bp
CTCGTGCCGTGCAAAGCGAGCGAGCGAGCGAGCGAACACGAAAGTAAAAA
TGGCGTCTCTTTTGCAGTCGCTATTAGATCCAAAGAAGAACTGGTTAGCA
GCCCAGCACATGAAAACGATCTCTAAACGTCTCCGTAATTTCGGGCTCCG
CTACGACGATCTGTACGATCCCTACTACGATTTGGACATCAAGGAAGCGC
TCGATCGGTTGCCACGTGAGATCGTTGACGCCCGTAACCAGCGTCTCAAG
CGCGCCATGGACCTCTCCATGAAGCACGAGTACCTCCCTGAAGATCTTCA
GGCTATGCAAACACCGTTTAGAAACTACCTACAAGATATGCTGGCCCTTG
TGAAAAGGGAGAAGGCAGAACGTGAAGCATTGGGAGCTTTGCCTCTCTAC
CAACGCACTATTCTATAAGCCATCTTAGTGTGTTATGTAGCCAGTGCTGA
ACTGAGTGAATCTGTCAATTGATGCAGACTGCTTTTGGAGCTGGTTTTTT
TTTTTTTTTGGCCATTGGGGTAAGAAGGCCAAGGCTGTTTCTACTGGGTG
GCCATTTAACGGGCCATTTCGCAATAAATCCGGCCGACCAACCTTAAATT
TAAAAAAAAAAAAAAAACCCTGGGGGGGGGCCCGG
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