CX292197

Overview
NameCX292197
Unique NameCX292197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292197 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.550e-55
Identity = 97/156 (62.18%), Postives = 116/156 (74.36%), Query Frame = 2
Query:  230 MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLT 697
            MEG G D+ S   P+ K   +  R++QYYLD++TPH   RWIGTL    IY LRVY + GFYI++Y              SP +DPE E  DGA+LPT+GSDEF+PFIRRLPEFKFWY++TKAFC+AFLMTFFS+FDVPVFWPILLCYW+VLFVLT
Sbjct:    1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLT 156          
BLAST of CX292197 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.501e-52
Identity = 95/157 (60.51%), Postives = 115/157 (73.25%), Query Frame = 2
Query:  230 MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEAL-DGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLT 697
            M+  G D+ S   P+ +   +  R++Q+YLD++TPH   RWIGTL  A IY LRVY +QGFYI+ Y              SP +DPE   + DG SLPT+GSDEF+PFIRRLPEFKFWY++TKAFC+AFLMTFFS+FDVPVFWPILLCYWIVLFVLT
Sbjct:    1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLT 157          
BLAST of CX292197 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.317e-40
Identity = 76/151 (50.33%), Postives = 100/151 (66.23%), Query Frame = 2
Query:  245 ADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLT 697
            +D++S    + +    FS+  Q+ LD++ PH L RWI  L    IY++RVY V+GFYI+TY              SP+ DPE     G SLPT+ SDE+RPF+RRLPEFKFW +I +AF + F+MTFF +FDVPVFWPILL YW++LF LT
Sbjct:   28 SDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLT 178          
BLAST of CX292197 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.030e-36
Identity = 72/135 (53.33%), Postives = 95/135 (70.37%), Query Frame = 2
Query:  299 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLT 697
            +++Q +LD+STPH   RW+ TL  + IY++RVY +QG+YIVTY              SPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A TK   VA + TFF  F+VPVFWPIL+ Y+I+LF +T
Sbjct:   27 QIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCIT 161          
BLAST of CX292197 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.522e-36
Identity = 71/144 (49.31%), Postives = 99/144 (68.75%), Query Frame = 2
Query:  272 IAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLT 697
            + ++ S   +++Q +LD+STP+   RW+ TL  + +Y++RVY +QG+YIVTY              SPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A TK   VA + TFF  F+VPVFWPIL+ Y+I+LF +T
Sbjct:   18 VYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCIT 161          
BLAST of CX292197 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.522e-36
Identity = 71/144 (49.31%), Postives = 99/144 (68.75%), Query Frame = 2
Query:  272 IAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLT 697
            + ++ S   +++Q +LD+STP+   RW+ TL  + +Y++RVY +QG+YIVTY              SPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A TK   VA + TFF  F+VPVFWPIL+ Y+I+LF +T
Sbjct:   18 VYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCIT 161          
BLAST of CX292197 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.316e-35
Identity = 70/135 (51.85%), Postives = 95/135 (70.37%), Query Frame = 2
Query:  299 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLT 697
            +++Q +LD+STP+   RW+ TL  + +Y++RVY +QG+YIVTY              SPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A TK   VA + TFF  F+VPVFWPIL+ Y+I+LF +T
Sbjct:   27 QIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCIT 161          
BLAST of CX292197 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.316e-35
Identity = 70/135 (51.85%), Postives = 95/135 (70.37%), Query Frame = 2
Query:  299 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLT 697
            +++Q +LD+STP+   RW+ TL  + +Y++RVY +QG+YIVTY              SPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A TK   VA + TFF  F+VPVFWPIL+ Y+I+LF +T
Sbjct:   27 QIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCIT 161          
BLAST of CX292197 vs. ExPASy Swiss-Prot
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.529e-35
Identity = 70/135 (51.85%), Postives = 94/135 (69.63%), Query Frame = 2
Query:  299 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLT 697
            +++Q +LD+STP+   RWI TL  + IY++RVY +QG+YIVTY              SPK+DP    ++ DG SLPT+ ++EFRPFIRRLPEFKFW++ TK   VA   TFF  F+VPVFWPIL+ Y+I+LF +T
Sbjct:   27 QIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCIT 161          
BLAST of CX292197 vs. ExPASy Swiss-Prot
Match: RER1_CAEEL (Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.274e-30
Identity = 67/134 (50.00%), Postives = 83/134 (61.94%), Query Frame = 2
Query:  305 FQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDP--EFEALD-GASLPTKGSDEFRPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLT 697
            +QYYLDR TPH   RW+  L +   +  R+  +QGFYIV Y              +P IDP  EFE  D G  LP+K +DEFRPF+RRLPEFKFW++  KA  +A   TFF  FDVPVFWPIL+ Y+ +L  LT
Sbjct:   23 YQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIAITCTFFEFFDVPVFWPILVMYFFILTFLT 156          
The following BLAST results are available for this feature:
BLAST of CX292197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1B_ARATH2.550e-5562.18Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1A_ARATH4.501e-5260.51Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1C_ARATH2.317e-4050.33Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
RER1_BOVIN2.030e-3653.33Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2[more]
RER1_RAT4.522e-3649.31Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=... [more]
RER1_MOUSE4.522e-3649.31Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1[more]
RER1_PONAB1.316e-3551.85Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1[more]
RER1_HUMAN1.316e-3551.85Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1[more]
RER1_CHICK6.529e-3551.85Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1[more]
RER1_CAEEL1.274e-3050.00Protein RER1 homolog OS=Caenorhabditis elegans GN=... [more]

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Properties
Property NameValue
Genbank descriptionC04011F06SK FlavFr1 Citrus clementina cDNA clone C04011F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292197 ID=CX292197; Name=CX292197; organism=Citrus clementina; type=EST; length=708bp
GGCACGAGGCCCTTTGAGAAATTATAATTCGCGTAAAATAAATGCCGGAA
AAAGAATTCATCTAAACGAGTGGGGCCATTACCCGCACGCTGCACCTTAA
TTCTTTAATCGAACAAAATTGTAGTAAGAAGATTCACATTCTGCAGAAGC
AGATCCGTCATCTCATATCCCGTCGGTGCCGTAACCCTAAATTGGCGTTT
CGTTAAGGAATTTGTAAGCTTAAAAAACCATGGAAGGACCAGGGGCTGAT
GCTGCTTCTGCGGTGGCCCCCATTGCAAAGTGGAGAAGTGATTTCTCGAG
GATGTTTCAGTACTATCTGGATCGATCAACCCCGCATCCATTGCAGAGGT
GGATTGGAACTCTTGCCGCTGCGTCGATTTACTTGTTGCGTGTTTACTGT
GTTCAAGGGTTTTACATTGTCACATATGGCTTAGGAATCTATATTCTGAA
TTTGTTGATTGGATTCCTATCGCCGAAGATTGATCCGGAGTTTGAAGCCT
TGGATGGAGCTTCATTGCCAACTAAAGGGTCTGATGAGTTTAGGCCATTC
ATTCGCCGTCTTCCTGAGTTTAAGTTCTGGTATGCCATCACAAAGGCTTT
CTGTGTGGCTTTCCTTATGACCTTCTTTTCTATATTTGATGTTCCTGTCT
TTTGGCCCATATTGCTGTGCTATTGGATTGTTCTGTTTGTCCTTACATGA
AGCGCCAA
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