CX292422

Overview
NameCX292422
Unique NameCX292422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length209
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: DCS4_GOSAR ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.149e-19
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLNSLV 209
            FRLLR+ G  +SCDVF KFKD++G FKSS+ +DVQG+L L++A+Y+ V GE ILDEAI+FTT HL+  V
Sbjct:  118 FRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVQGLLELYQASYLRVHGEDILDEAISFTTNHLSLAV 186          
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: DCS2_GOSAR ((+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.559e-19
Identity = 42/69 (60.87%), Postives = 56/69 (81.16%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLNSLV 209
            FRLLR+ G  +SCDVF KFKD++G FKSS+ +DV+G+L L++A+Y+ V GE ILDEAI+FTT HL+  V
Sbjct:  118 FRLLREHGFNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTNHLSLAV 186          
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: DCS1_GOSAR ((+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.700e-19
Identity = 42/69 (60.87%), Postives = 56/69 (81.16%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLNSLV 209
            FRLLR+ G  +SCDVF KFKD++G FKSS+ +DV+G+L L++A+Y+ V GE ILDEAI+FTT HL+  V
Sbjct:  118 FRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAV 186          
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: DCS1_GOSHI ((+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.723e-19
Identity = 41/69 (59.42%), Postives = 56/69 (81.16%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLNSLV 209
            FRLLR+ G  +SCDVF KFKD++G FKSS+ +DV+G+L L++A+Y+ V GE ILDEAI+FT+ HL+  V
Sbjct:  118 FRLLREHGFHVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTSNHLSLAV 186          
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.659e-18
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHL 197
            FRLLR+ G  ISCD F KFKD+ G FK+SL +DVQG+L L+EA+YM V GE ILDEAI+FTT  L
Sbjct:  119 FRLLREHGFDISCDAFNKFKDEAGNFKASLTSDVQGLLELYEASYMRVHGEDILDEAISFTTAQL 183          
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: HUMS_ARATH (Alpha-humulene/(-)-(E)-beta-caryophyllene synthase OS=Arabidopsis thaliana GN=TPS21 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.006e-15
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLNSL 206
            F++ RQ G K+S DVFEKFKD+ G+FK  L+ D  GMLSL+EAA     GE I+DEA+AF+ +HL  +
Sbjct:  110 FQVFRQFGFKLSADVFEKFKDENGKFKGHLVTDAYGMLSLYEAAQWGTHGEDIIDEALAFSRSHLEEI 177          
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: CASS_RICCO (Casbene synthase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.006e-15
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLNS 203
            FR+ RQ G K+S DVF KFKD +G+FK SL  D +GMLSL EA++++V GE IL+EA AFT  +L S
Sbjct:  165 FRVFRQHGFKMSSDVFSKFKDSDGKFKESLRGDAKGMLSLFEASHLSVHGEDILEEAFAFTKDYLQS 231          
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: ECS1_ARTAN (Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.242e-15
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLNSL 206
            FRL+RQ G  +S D+F  +KD EGRFK SL  DV G+L L+EAAYM V GE ILD+A+ FT T L+ +
Sbjct:  107 FRLMRQHGFFVSSDIFSTYKDKEGRFKESLEKDVHGLLELYEAAYMFVPGEGILDDALVFTRTCLDEI 174          
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: BARS_ARATH (Alpha-barbatene synthase OS=Arabidopsis thaliana GN=BS PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.453e-14
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLNSL 206
            FR+ R  G  +S DVF+ FK D+G+FK SLI DV+GMLS +EA +     +HILDEA++FT  HL SL
Sbjct:  117 FRVFRTYGYYMSSDVFKIFKGDDGKFKESLIEDVKGMLSFYEAVHFGTTTDHILDEALSFTLNHLESL 184          
BLAST of CX292422 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.228e-14
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 3
Query:    3 FRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLHEAAYMAVRGEHILDEAIAFTTTHLNSLV 209
            FRLLRQ G  +S +VF  FKD+ G FK+ L  D +GMLSL+EA++  + GE+IL+EA  F+T HL   V
Sbjct:  157 FRLLRQHGYSVSQEVFNSFKDERGSFKACLCEDTKGMLSLYEASFFLIEGENILEEARDFSTKHLEEYV 225          
The following BLAST results are available for this feature:
BLAST of CX292422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DCS4_GOSAR1.149e-1962.32(+)-delta-cadinene synthase isozyme C2 OS=Gossypiu... [more]
DCS2_GOSAR2.559e-1960.87(+)-delta-cadinene synthase isozyme XC14 OS=Gossyp... [more]
DCS1_GOSAR5.700e-1960.87(+)-delta-cadinene synthase isozyme XC1 OS=Gossypi... [more]
DCS1_GOSHI9.723e-1959.42(+)-delta-cadinene synthase OS=Gossypium hirsutum ... [more]
DCS3_GOSAR1.659e-1866.15(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]
HUMS_ARATH1.006e-1554.41Alpha-humulene/(-)-(E)-beta-caryophyllene synthase... [more]
CASS_RICCO1.006e-1558.21Casbene synthase, chloroplastic OS=Ricinus communi... [more]
ECS1_ARTAN2.242e-1557.35Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=... [more]
BARS_ARATH1.453e-1454.41Alpha-barbatene synthase OS=Arabidopsis thaliana G... [more]
MYRS_QUEIL4.228e-1452.17Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]

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Properties
Property NameValue
Genbank descriptionC04015E09SK FlavFr1 Citrus clementina cDNA clone C04015E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292422 ID=CX292422; Name=CX292422; organism=Citrus clementina; type=EST; length=209bp
ATTTTCGATTGCTTAGGCAGCAAGGAATCAAGATTTCATGTGATGTGTTT
GAGAAGTTCAAAGATGATGAGGGTAGATTCAAGTCATCGTTGATAAACGA
TGTTCAAGGGATGTTAAGTTTGCACGAGGCAGCATACATGGCAGTTCGCG
GAGAACATATATTAGATGAAGCCATTGCTTTCACTACCACTCACCTGAAT
TCATTGGTT
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