CX292859

Overview
NameCX292859
Unique NameCX292859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_ARATH (Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2)

HSP 1 Score: 303.138 bits (775), Expect = 8.536e-82
Identity = 146/176 (82.95%), Postives = 160/176 (90.91%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRLTNLINGNGK 546
            +G+IGDGQDILVRVHSECLTGDIFGSARCDCG+QLAL+MQQIEA GRGVLVYLRGHEGRGIGLGHKLRAYNLQD GRDTVEANEELGLPVDSREYGIGAQ++RDLGVRTMKLMTNNP+KYVGLKGYGLA+ GRVPL++ I KENKRYLETKR KMGH+YGL+  G +   I    +
Sbjct:  367 KGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALSMQQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEELGLPVDSREYGIGAQIIRDLGVRTMKLMTNNPAKYVGLKGYGLAIVGRVPLLSLITKENKRYLETKRTKMGHMYGLKFKGDVVEKIESESE 542          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_SALTO (Riboflavin biosynthesis protein ribBA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ribBA PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.199e-59
Identity = 109/159 (68.55%), Postives = 129/159 (81.13%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYG 498
            GD+GDG+D+LVR HSECLTGD+FGS RCDCG QL  AM+ +   GRGV++Y+RGHEGRGIGL HKLRAY LQD GRDTVEAN ELGLPVD+R+YG GAQ+L DLGVR+M+L+TNNP+K  GL+GYGL V  RV L      EN+RYL TKR +MGH+ G
Sbjct:  242 GDLGDGRDVLVRAHSECLTGDVFGSLRCDCGLQLDTAMELVAKEGRGVVLYIRGHEGRGIGLLHKLRAYQLQDKGRDTVEANLELGLPVDARDYGTGAQVLYDLGVRSMRLLTNNPAKRAGLEGYGLTVTERVALPVQSHPENERYLRTKRDRMGHLLG 400          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_NOCFA (Riboflavin biosynthesis protein ribBA OS=Nocardia farcinica GN=ribBA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.672e-59
Identity = 106/163 (65.03%), Postives = 133/163 (81.60%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH-IYGLE 504
            +GDIGDG+D+LVRVHSECLTGD+FGS RCDCG QL  A++ ++  GRGV++Y+RGHEGRGIGL HKL+AY LQD GRDTV+AN +LGLP D+R+YG GAQ+L DLG+R+M+L+TNNP+K VGL GYGL +  RVP+      EN RYL TKR +MGH + GL+
Sbjct:  243 RGDIGDGEDVLVRVHSECLTGDVFGSLRCDCGPQLDAALEMVDQEGRGVVLYMRGHEGRGIGLMHKLQAYQLQDSGRDTVDANLDLGLPADARDYGTGAQILVDLGIRSMRLLTNNPAKRVGLDGYGLTITERVPMPLRANAENLRYLRTKRDRMGHDLVGLD 405          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_SALAI (Riboflavin biosynthesis protein ribBA OS=Salinispora arenicola (strain CNS-205) GN=ribBA PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.732e-58
Identity = 106/157 (67.52%), Postives = 128/157 (81.53%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 492
            GD+GDG+D+LVRVHSECLTGD+ GS RCDCG QL  A+ Q+   GRGV++Y+RGHEGRGIGL HKL+AY LQD GRDTV+AN +LGLP D+R+YG GAQ+L DLGVR+M+L+TNNP+K  GL+GYGL VAGRV L      EN RYL TKR +MGH+
Sbjct:  242 GDLGDGRDVLVRVHSECLTGDVLGSLRCDCGPQLNAALDQVAREGRGVVLYVRGHEGRGIGLLHKLQAYQLQDTGRDTVDANLDLGLPADARDYGTGAQILYDLGVRSMRLLTNNPAKRAGLEGYGLTVAGRVELPVRPHPENVRYLRTKRDRMGHL 398          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCA9 (Riboflavin biosynthesis protein ribBA OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ribBA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.765e-56
Identity = 102/156 (65.38%), Postives = 124/156 (79.49%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            G  GDG D+LVRVHSECLTGD+FGS RCDCG QL  AM+ +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YG+GAQ+L DLGV++M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR +MGH
Sbjct:  248 GPDGDGNDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMEMVAKEGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGLPADARDYGLGAQILVDLGVKSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANSENIRYLRTKRDRMGH 403          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCPA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium paratuberculosis GN=ribBA PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.045e-56
Identity = 104/156 (66.67%), Postives = 122/156 (78.21%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            G   DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR KMGH
Sbjct:  248 GPNSDGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRTNAENIRYLMTKRDKMGH 403          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_BACSK (Riboflavin biosynthesis protein ribBA OS=Bacillus clausii (strain KSM-K16) GN=ribBA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.051e-55
Identity = 104/161 (64.60%), Postives = 127/161 (78.88%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGL 501
            +GD+G+G+ +LVRVHSECLTGD+FGS RCDCG QL  A++QIEA GRGVL+Y++  EGRGIGL +K RAY LQ++G DTVEANE LG P D REYGIGAQ+LRDLG+R M+L+TNNP K  GL+GY L +  RVPL      EN+RYL TKR K+GH+  L
Sbjct:  238 KGDVGNGEPVLVRVHSECLTGDVFGSKRCDCGPQLHAALKQIEAEGRGVLLYMK-QEGRGIGLINKFRAYKLQEEGYDTVEANERLGFPADLREYGIGAQILRDLGIRDMRLLTNNPRKIAGLEGYDLNIVERVPLQMEAVAENERYLHTKREKLGHMLNL 397          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_RHOE4 (Riboflavin biosynthesis protein ribBA OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=ribBA PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.341e-55
Identity = 103/162 (63.58%), Postives = 125/162 (77.16%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH-IYGLE 504
            G  GDG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN ELGLP D+R+YGIGAQ+L DLG+ +M+L+TNNP+K VGL GYGL +  RVP+      EN  YL TKR +MGH + GL+
Sbjct:  248 GPDGDGSDVLVRVHSECLTGDVFGSLRCDCGPQLDAALDMVAQEGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGSDTVDANLELGLPADARDYGIGAQILVDLGISSMRLLTNNPAKRVGLDGYGLQITDRVPMPLRANAENLTYLRTKRDRMGHDLIGLD 409          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCA1 (Riboflavin biosynthesis protein ribBA OS=Mycobacterium avium (strain 104) GN=ribBA PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.341e-55
Identity = 103/156 (66.03%), Postives = 121/156 (77.56%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            G   DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LG P D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR KMGH
Sbjct:  248 GPNSDGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKMGH 403          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCMM (Riboflavin biosynthesis protein ribBA OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ribBA PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.057e-55
Identity = 104/156 (66.67%), Postives = 122/156 (78.21%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 489
            G   DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR +MGH
Sbjct:  248 GPNSDGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGVVLYMRGHEGRGIGLLHKLQAYQLQDAGDDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDRMGH 403          
The following BLAST results are available for this feature:
BLAST of CX292859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RIBBA_ARATH8.536e-8282.95Riboflavin biosynthesis protein ribBA, chloroplast... [more]
RIBBA_SALTO1.199e-5968.55Riboflavin biosynthesis protein ribBA OS=Salinispo... [more]
RIBBA_NOCFA2.672e-5965.03Riboflavin biosynthesis protein ribBA OS=Nocardia ... [more]
RIBBA_SALAI1.732e-5867.52Riboflavin biosynthesis protein ribBA OS=Salinispo... [more]
RIBBA_MYCA92.765e-5665.38Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCPA8.045e-5666.67Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_BACSK1.051e-5564.60Riboflavin biosynthesis protein ribBA OS=Bacillus ... [more]
RIBBA_RHOE42.341e-5563.58Riboflavin biosynthesis protein ribBA OS=Rhodococc... [more]
RIBBA_MYCA12.341e-5566.03Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCMM3.057e-5566.67Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04022D02SK FlavFr1 Citrus clementina cDNA clone C04022D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292859 ID=CX292859; Name=CX292859; organism=Citrus clementina; type=EST; length=676bp
GAATTCGGCACGAGGGAACAGGGTGACATTGGGGATGGACAAGATATTCT
TGTGAGAGTGCACTCAGAGTGTCTCACTGGAGATATATTTGGATCAGCCA
GATGTGATTGTGGTGATCAGCTTGCACTTGCAATGCAGCAGATTGAGGCT
GCTGGCAGGGGTGTATTAGTTTATCTCCGTGGTCATGAGGGAAGGGGCAT
TGGTTTAGGCCACAAGCTTCGCGCTTATAACTTGCAGGACGATGGGCGTG
ATACAGTTGAAGCAAATGAGGAATTGGGATTGCCTGTTGACTCACGGGAA
TATGGCATTGGTGCACAGATGCTAAGGGATCTTGGTGTTCGAACAATGAA
GCTGATGACAAACAACCCTTCGAAGTATGTTGGACTCAAGGGTTATGGTT
TGGCTGTTGCAGGAAGGGTTCCCCTAATAACTCCCATTAAAAAGGAAAAC
AAGAGATATCTGGAGACTAAACGTGCTAAAATGGGTCACATTTATGGGTT
AGAATCTAATGGCCGGTTAACAAATCTCATTAACGGTAACGGTAAGCCGA
GTATCAAATCTTCATCTGATACTGTATCTGACTCGTAAGCTGCACTAATT
TACTTGGTTTGGACACGTGATTCAAGTACGAGTTGAAGATAGACTCTGGC
ATGACAAAAAGGGAAGCATTATCACC
back to top