CX292952

Overview
NameCX292952
Unique NameCX292952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292952 vs. ExPASy Swiss-Prot
Match: APX2_ORYSJ (L-ascorbate peroxidase 2, cytosolic OS=Oryza sativa subsp. japonica GN=APX2 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.964e-34
Identity = 69/91 (75.82%), Postives = 72/91 (79.12%), Query Frame = 1
Query:    4 LSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHLKLSELGSAD 276
            LSGGHTLGRCHKERSGFEG WT+NPLIFDNSYF              PSDKAL+ DP FRPLVEKYAADEDA FADYAEAHLKLSELG A+
Sbjct:  160 LSGGHTLGRCHKERSGFEGAWTSNPLIFDNSYFTELVSGEKEGLLQLPSDKALMADPAFRPLVEKYAADEDAFFADYAEAHLKLSELGFAE 250          
BLAST of CX292952 vs. ExPASy Swiss-Prot
Match: APX1_ARATH (L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis thaliana GN=APX1 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 8.831e-34
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    4 LSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHLKLSELGSADA 279
            LSG HTLGRCHK+RSGFEG WT+NPLIFDNSYF               SDKALL+DPVFRPLVEKYAADEDA FADYAEAH+KLSELG ADA
Sbjct:  159 LSGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFADA 250          
BLAST of CX292952 vs. ExPASy Swiss-Prot
Match: APX1_ORYSJ (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. japonica GN=APX1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.967e-33
Identity = 69/92 (75.00%), Postives = 69/92 (75.00%), Query Frame = 1
Query:    4 LSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHLKLSELGSADA 279
            LSGGHTLGRCHKERSGFEGPWT NPL FDNSYF              PSDKALL DP FRPLVEKYAADE A F DY EAHLKLSELG ADA
Sbjct:  159 LSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALLSDPAFRPLVEKYAADEKAFFEDYKEAHLKLSELGFADA 250          
BLAST of CX292952 vs. ExPASy Swiss-Prot
Match: APX1_PEA (L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 7.476e-33
Identity = 68/92 (73.91%), Postives = 71/92 (77.17%), Query Frame = 1
Query:    4 LSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHLKLSELGSADA 279
            LSGGHT+G  HKERSGFEGPWT+NPLIFDNSYF              PSDKALL D VFRPLVEKYAADED  FADYAEAHLKLSELG A+A
Sbjct:  159 LSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELGFAEA 250          
BLAST of CX292952 vs. ExPASy Swiss-Prot
Match: APX2_ARATH (L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis thaliana GN=APX2 PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 9.763e-33
Identity = 67/93 (72.04%), Postives = 70/93 (75.27%), Query Frame = 1
Query:    4 LSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHLKLSELGSADAE 282
            LSGGHTLGRCHKERSGFEG WT NPLIFDNSYF              P+DKALL+DP+F P VEKYAADEDA F DY EAHLKLSELG AD E
Sbjct:  159 LSGGHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFADKE 251          
BLAST of CX292952 vs. ExPASy Swiss-Prot
Match: APX1_ORYSI (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. indica GN=APX1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.665e-32
Identity = 68/92 (73.91%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    4 LSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHLKLSELGSADA 279
            LSGGHTLGRCHKERSGFEGPWT NPL FDNSYF              PSDKALL DP F PLVEKYAADE A F DY EAHLKLSELG ADA
Sbjct:  159 LSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALLSDPAFCPLVEKYAADEKAFFEDYKEAHLKLSELGFADA 250          
BLAST of CX292952 vs. ExPASy Swiss-Prot
Match: APX3_ARATH (L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.046e-26
Identity = 58/88 (65.91%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    4 LSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHLKLSELG 267
            LSGGHTLGR H ERSGF+GPWT  PL FDNSYF              P+DK LLEDP FR LVE YA DEDA F DYAE+H KLSELG
Sbjct:  156 LSGGHTLGRAHPERSGFDGPWTQEPLKFDNSYFVELLKGESEGLLKLPTDKTLLEDPEFRRLVELYAKDEDAFFRDYAESHKKLSELG 243          
BLAST of CX292952 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.363e-25
Identity = 56/88 (63.64%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    4 LSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHLKLSELG 267
            LSGGHTLGR H ERSGFEG WT  PL FDNSYF              P+DKALLEDP FR  V+ YA DED  F DYAE+H KLSELG
Sbjct:  156 LSGGHTLGRAHPERSGFEGAWTQEPLKFDNSYFLELLKGESEGLLKLPTDKALLEDPSFRRYVDLYARDEDTFFKDYAESHKKLSELG 243          
BLAST of CX292952 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.180e-24
Identity = 54/88 (61.36%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    4 LSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHLKLSELG 267
            LSGGHTLG+   ERSGF+G WT +PL FDNSYF              P+DKAL+EDP FR  VE YA DEDA F DYAE+H KLSELG
Sbjct:  157 LSGGHTLGKARPERSGFDGAWTKDPLKFDNSYFIELLKENSEGLLKLPTDKALVEDPTFRRYVELYAKDEDAFFRDYAESHKKLSELG 244          
BLAST of CX292952 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.180e-24
Identity = 54/88 (61.36%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    4 LSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHLKLSELG 267
            LSGGHTLG+   ERSGF+G WT +PL FDNSYF              P+DKAL+EDP FR  VE YA DEDA F DYAE+H KLSELG
Sbjct:  157 LSGGHTLGKARPERSGFDGAWTKDPLKFDNSYFIELLKENSEGLLKLPTDKALVEDPTFRRYVELYAKDEDAFFRDYAESHKKLSELG 244          
The following BLAST results are available for this feature:
BLAST of CX292952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
APX2_ORYSJ3.964e-3475.82L-ascorbate peroxidase 2, cytosolic OS=Oryza sativ... [more]
APX1_ARATH8.831e-3475.00L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis... [more]
APX1_ORYSJ1.967e-3375.00L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX1_PEA7.476e-3373.91L-ascorbate peroxidase, cytosolic OS=Pisum sativum... [more]
APX2_ARATH9.763e-3372.04L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis... [more]
APX1_ORYSI1.665e-3273.91L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX3_ARATH1.046e-2665.91L-ascorbate peroxidase 3, peroxisomal OS=Arabidops... [more]
APX4_ORYSJ3.363e-2563.64Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX3_ORYSJ2.180e-2461.36Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI2.180e-2461.36Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC04023G01SK FlavFr1 Citrus clementina cDNA clone C04023G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292952 ID=CX292952; Name=CX292952; organism=Citrus clementina; type=EST; length=430bp
GTTTTATCCGGCGGTCATACATTGGGTAGGTGCCACAAGGAGCGTTCTGG
ATTTGAAGGACCCTGGACTAACAATCCACTTATTTTTGACAATTCATATT
TTAAGGAATTGCTGAGTGGAGAGAAAGAAGGTCTACTTCAGCTGCCATCA
GACAAGGCTCTTCTCGAGGACCCAGTGTTTCGTCCTCTTGTTGAAAAATA
TGCTGCAGATGAGGATGCCGTCTTTGCAGATTACGCTGAAGCTCATTTGA
AGCTCTCAGAACTCGGATCTGCGGATGCTGAGTAATGAATCAAATTATGA
AGCAGCTGAATGCGGCTATCCATGTACTTTATTGTGGCTTCTAAAGTCTC
AAATTTCTGGTTATGTCCTTGTATTTAAATTGGTTGATGTGATGGAATCC
AAATAGCAAAAGCTGCCACATTAGTGTTTG
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