CX292969

Overview
NameCX292969
Unique NameCX292969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX292969 vs. ExPASy Swiss-Prot
Match: CHUP1_ARATH (Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.130e-76
Identity = 141/167 (84.43%), Postives = 156/167 (93.41%), Query Frame = 2 
Query:   14 EHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEELRSRVHKQTVEDN 514
            +HFDWPEGKADALREAAFEYQDL+KLEKQV+SFVDDP L CE ALKKMYKLLEKVEQSVYALLRTRDMAISRY+EFGIPVDWL DTGVVGKIKLSSVQLA+KYMKRV+ EL+++S  +K+PNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEELRSR   ++ ++N
Sbjct:  824 KHFDWPEGKADALREAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALLRTRDMAISRYKEFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEELRSRAKTESGDNN 990
The following BLAST results are available for this feature:
BLAST of CX292969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CHUP1_ARATH1.130e-7684.43Protein CHUP1, chloroplastic OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionC04026A08SK FlavFr1 Citrus clementina cDNA clone C04026A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292969 ID=CX292969; Name=CX292969; organism=Citrus clementina; type=EST; length=602bp
AATTCGGCACGAGGAGCACTTTGATTGGCCTGAAGGGAAAGCAGATGCAT
TAAGAGAGGCTGCTTTTGAGTACCAGGACCTAGTGAAATTGGAAAAGCAA
GTGTCCTCTTTTGTTGATGATCCCGGCCTCCCATGTGAATCTGCACTAAA
GAAGATGTACAAATTGCTTGAAAAAGTGGAACAGAGTGTTTATGCATTGT
TGCGTACAAGAGACATGGCTATTTCACGATATAGAGAATTTGGAATTCCA
GTTGATTGGTTGCTAGACACTGGAGTTGTTGGCAAGATCAAGCTCTCTTC
CGTGCAATTGGCAAGGAAGTACATGAAACGTGTTTCAACTGAACTTGAAG
CTATGAGCAGACCGGAGAAGGAACCAAACAGAGAGTTTTTACTTCTGCAA
GGTGTCCGTTTTGCTTTTCGTGTTCACCAGTTTGCTGGAGGCTTTGATGC
GGAGAGCATGAAGGCATTTGAAGAGCTAAGGAGCCGTGTTCATAAACAAA
CTGTGGAAGACAACAAGCAGGAAGCATGAGATATATTCCTTTTCTTGGTT
TTATTTATCTTCAATTTTATATTGTACATCTTGCATTCTTACTTGATATG
AC
back to top