CX293104

Overview
NameCX293104
Unique NameCX293104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX293104 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 42/83 (50.60%), Postives = 48/83 (57.83%), Query Frame = 3 
Query:   66 VPAKAEDSSNRAAHDEGKEKKT*RVRKNVYRGIRERPWGKWAVEIRDPFKFQGRPRLARHTFNTAE--------ATKRIRGNK 290
            V  K E      A + GK +K    RKNVYRGIR+RPWGKWA EIRDP K     R+   TFNTAE        A K+IRG+K
Sbjct:   54 VNVKEEAVKKEQATEPGKRRK----RKNVYRGIRKRPWGKWAAEIRDPRK---GVRVWLGTFNTAEEAAMAYDVAAKQIRGDK 129
The following BLAST results are available for this feature:
BLAST of CX293104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RAP23_ARATH7.353e-1150.60Ethylene-responsive transcription factor RAP2-3 OS... [more]
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Properties
Property NameValue
Genbank descriptionC04027F08SK FlavFr1 Citrus clementina cDNA clone C04027F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293104 ID=CX293104; Name=CX293104; organism=Citrus clementina; type=EST; length=570bp
GAATTCGGCACGAGGGCTCAACAAAATCTCTCAAAACCGTTGTTCTGAAC
TTCCGGCGGCTTTCAGTACCGGCGAAGGCTGAAGATTCAAGCAATAGAGC
TGCTCATGATGAGGGGAAGGAGAAGAAGACTTAGCGAGTTCGCAAGAACG
TATATAGAGGAATAAGGGAGAGGCCGTGGGGAAAATGGGCAGTTGAAATT
AGAGACCCTTTCAAGTTTCAAGGGCGTCCGCGTTTGGCTCGGCACACTTT
CAACACAGCCGAAGCCACCAAGCGTATCCGCGGCAACAAGGCCTAGCTCA
ACTTTGCTCTGCCGCCGCCGGCGCCAATAACTCCACCTCTAGCTAAGAAA
CGATGCACGCTATCCCCTGCTATCCCCTGAGTTACTCAGCCGAGTTTTGA
AGATTACTTTTTTTTTTCTTTTGGGTTTTGATTGGTTTATCATTTGAGTC
TACAAACAAATGGTATTCTTTTTCCCTAAATTGTGAACACTTGGGGTTTT
TATTGTTGAAATGCTTTATTATTTTTCGATGACCAAAAAAAAAAAAAAAA
AACTCGGGGGGGGGCCGGGT
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