CX293111

Overview
NameCX293111
Unique NameCX293111
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293111 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 3.907e-111
Identity = 195/212 (91.98%), Postives = 195/212 (91.98%), Query Frame = 1
Query:   16 KSYPKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTGXXXXXXXXXXXXXXXXVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFF 651
            KSY KIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTG                VTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFF
Sbjct:   78 KSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFF 289          

HSP 2 Score: 28.4906 bits (62), Expect = 3.907e-111
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  645 FFYGDAEDFRQ 677
            FFYGDAEDFRQ
Sbjct:  288 FFYGDAEDFRQ 298          
BLAST of CX293111 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 5.587e-110
Identity = 195/212 (91.98%), Postives = 195/212 (91.98%), Query Frame = 1
Query:   16 KSYPKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTGXXXXXXXXXXXXXXXXVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFF 651
            KSY KIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTG                VTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFF
Sbjct:   78 KSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFF 289          

HSP 2 Score: 24.6386 bits (52), Expect = 5.587e-110
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  645 FFYGDAEDFRQ 677
            FF GDAEDFRQ
Sbjct:  288 FFDGDAEDFRQ 298          
BLAST of CX293111 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.291e-40
Identity = 97/221 (43.89%), Postives = 131/221 (59.28%), Query Frame = 1
Query:   22 YPKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSL-RYGFGA------VIGLDPVAGTSK---TTGXXXXXXXXXXXXXXXXVTVIGTGLGGVAR--CITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDF 648
            Y ++  H++SHGFI++APQLY SI  P   +E+ S AE+ +WL  GL   LP     N+S  A+ GHSRGG+TAFA++L ++G+ +      +IG+DPV GT K   T                  + VIG+GLG  AR      CAP G NH EFF  C+  +  HFVA DYGH+D+LDD+   ++  + S   CKNG E R PMRR V G+VV+FLK +
Sbjct:   72 YSQLMLHVSSHGFILIAPQLY-SIAGPDTMDEIKSTAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSNLKISTLIGIDPVDGTGKGKQTPPPVLAYLPNSFDLDKTPILVIGSGLGETARNPLFPPCAPPGVNHREFFRECQGPA-WHFVAKDYGHLDMLDDDTKGIRGKS-SYCLCKNGEERR-PMRRFVGGLVVSFLKAY 288          
BLAST of CX293111 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.436e-39
Identity = 93/218 (42.66%), Postives = 126/218 (57.80%), Query Frame = 1
Query:   22 YPKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSK--TTGXXXXXXXXXXXXXXXXVTVIGTGLGGV-ARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLK 642
            Y  + +HIASHG+I+VAPQL   +PP     E++ A  V  W  + L+ +LP +  AN    +++GHSRGG+TAFA++L +         F A+IG+DPVAGT+K   T                 V V+GTGLG      +  CAP   NHEEF+  CK +++AHFVA DYGHMD+LDD+      + ++   CKNG   +  MR  V GIVVAFLK
Sbjct:   72 YSDVLNHIASHGYILVAPQLCKLLPPGGQV-EVDDAGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAGTNKYIRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNHEEFYKECK-ATKAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGIVVAFLK 286          
BLAST of CX293111 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.864e-34
Identity = 90/226 (39.82%), Postives = 127/226 (56.19%), Query Frame = 1
Query:   16 KSYPKIFDHIASHGFIVVAPQLYTSIPP--PSATNELNSAAEVAEWLPQGLQ---QNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG-------FGAVIGLDPVAGTS--KTTGXXXXXXXXXXXXXXXXVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFF 651
            + Y   F++IASHGFIVVAP+L+   PP  PS  +E++ AA VA W+P  LQ   Q      E ++  +A+ GHSRGG++AFAL+L +        F A+IG+DPVAG S    T                 VTVIG+GLG       +CAP   +H++F++ CK +S +HFV T YGHMD+L++      +  +S   C      +  MRR + GI+VAFL  +F
Sbjct:   88 EDYSLFFNYIASHGFIVVAPKLFRLFPPKLPSQQDEIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGFSNIKLDVTFSALIGVDPVAGRSVDDRTLPHVLTYKPNSFNLSIPVTVIGSGLGNHT---ISCAPNHVSHQQFYDECKENS-SHFVITKYGHMDMLNEFRLSPIAVTMS-LMCAQSFRPKATMRRTLGGIMVAFLNAYF 308          
The following BLAST results are available for this feature:
BLAST of CX293111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITSI3.907e-11191.98Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_CITUN5.587e-11091.98Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH2_ARATH1.291e-4043.89Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH1_ARATH2.436e-3942.66Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH0_CHEAL6.864e-3439.82Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
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Properties
Property NameValue
Genbank descriptionC04027G04SK FlavFr1 Citrus clementina cDNA clone C04027G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293111 ID=CX293111; Name=CX293111; organism=Citrus clementina; type=EST; length=688bp
AATTGGCACGTAGGCAAAAGCTATCCGAAGATCTTTGACCACATAGCGTC
CCATGGATTCATCGTTGTTGCTCCTCAGCTATACACCAGTATTCCGCCAC
CAAGTGCAACCAATGAACTTAACAGCGCAGCAGAAGTCGCGGAGTGGCTA
CCCCAAGGCCTGCAGCAAAATCTCCCAGAAAATACTGAAGCGAACGTAAG
CTTGGTTGCTGTTATGGGGCACAGTCGCGGAGGACAAACGGCTTTTGCTC
TATCACTACGCTATGGATTCGGTGCAGTAATAGGGCTAGACCCCGTTGCT
GGGACTAGTAAAACCACTGGACTTGATCCCTCGATTCTTTCTTTCGACTC
TTTCGACTTCTCGATTCCCGTTACTGTGATTGGCACCGGACTCGGCGGCG
TGGCTAGGTGCATCACCGCTTGTGCACCTGAAGGAGCAAACCATGAAGAG
TTTTTCAACAGATGCAAGAACTCTTCTCGTGCTCATTTTGTTGCTACAGA
TTATGGTCACATGGACATTTTGGATGATAATCCATCAGACGTAAAGTCTT
GGGCGCTTTCGAAATACTTTTGCAAAAATGGAAACGAATCGAGGGATCCA
ATGAGAAGATGTGTGAGTGGGATTGTGGTGGCGTTTCTGAAGGATTTTTT
TATGGTGATGCTGAGGATTTTAGGCAATCCTGAAGACC
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