CX293319
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PPR62_ARATH (Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2 SV=2) HSP 1 Score: 159.458 bits (402), Expect = 1.531e-42 Identity = 74/109 (67.89%), Postives = 91/109 (83.49%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 GQQVH Q++K+ + +K+GS+L+DMYAKCG I+DA RVFD MQ+K VF+WTSMIDGYGKNGNP +ALELF M+E ++PNYVTFLGALSAC HSGL+ KG E F+SM Sbjct: 292 GQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESM 400 HSP 2 Score: 34.6538 bits (78), Expect = 1.531e-42 Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 2 Query: 368 RDYSMKPNMEHYACM 412 RDYSMKP MEHYAC+ Sbjct: 402 RDYSMKPKMEHYACI 416
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 4.462e-24 Identity = 46/116 (39.66%), Postives = 71/116 (61.21%), Query Frame = 1 Query: 16 CLLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 CL L G+Q+H +K D +G++LVDMYAKCG IDDA +F ++ + W +M+ G ++G + L+LF M+ ++P+ VTF+G LSAC HSGL+++ + SM Sbjct: 630 CLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSM 745 HSP 2 Score: 36.5798 bits (83), Expect = 4.462e-24 Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 2 Query: 347 KHLTAWHRDYSMKPNMEHYACMA 415 KH+ + H DY +KP +EHY+C+A Sbjct: 740 KHMRSMHGDYGIKPEIEHYSCLA 762
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.854e-24 Identity = 49/109 (44.95%), Postives = 72/109 (66.06%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 G+Q+H Q++K + + +AL+ MY+KCG ID A RVF+ M+ + V +WTSMI G+ K+G + LE F M E V+PN VT++ LSAC H GL+++G F+SM Sbjct: 493 GEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSM 601 HSP 2 Score: 33.8834 bits (76), Expect = 9.854e-24 Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2 Query: 347 KHLTAWHRDYSMKPNMEHYACM 412 +H + + D+ +KP MEHYACM Sbjct: 596 RHFNSMYEDHKIKPKMEHYACM 617 HSP 3 Score: 75.8702 bits (185), Expect = 7.187e-14 Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKC---GKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGN-PNQALELFC-MMQECCVQPNYVTFLGALSACGH 321 G+Q+H I++ +DV+ +LVDMYAKC G +DD +VFD M+ V +WT++I GY KN N +A+ LF M+ + V+PN+ TF A ACG+ Sbjct: 288 GKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.836e-23 Identity = 49/112 (43.75%), Postives = 78/112 (69.64%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQR 372 G+ +H Q+I+ +DV +G++++DMY KCG+++ A + FD M+ K V +WT+MI GYG +G+ +ALELF M + V+PNY+TF+ L+AC H+GL +G F++M R Sbjct: 306 GKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGR 417 HSP 2 Score: 23.0978 bits (48), Expect = 2.836e-23 Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 2 Query: 374 YSMKPNMEHYACM 412 + ++P +EHY CM Sbjct: 418 FGVEPGLEHYGCM 430 HSP 3 Score: 68.1662 bits (165), Expect = 1.499e-11 Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1 Query: 19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELF 249 L +F G+Q H Q D+ + SAL+ MY+ CGK++DA +VFD + ++ + +WTSMI GY NGN A+ LF Sbjct: 89 LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLF 165
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.841e-23 Identity = 50/115 (43.48%), Postives = 72/115 (62.61%), Query Frame = 1 Query: 28 LFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQR 372 L G++VHC +IKN + G+ L+D+Y KCG +++A VF+ + +K V+TWT+MI+G+ +G A +LF M V PN VTF+ LSAC H GL+ +GR F SM R Sbjct: 322 LHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGR 436 HSP 2 Score: 24.2534 bits (51), Expect = 2.841e-23 Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 2 Query: 374 YSMKPNMEHYACM 412 ++M+P +HYACM Sbjct: 437 FNMEPKADHYACM 449 HSP 3 Score: 77.0258 bits (188), Expect = 3.226e-14 Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 1 Query: 82 DVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGR 345 DV +GS+LVDMY KC DDA +VFD M + V TWT++I GY ++ ++ + +F M + V PN T LSAC H G L +GR Sbjct: 239 DVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGR 326
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.367e-22 Identity = 50/111 (45.05%), Postives = 74/111 (66.67%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMA 366 G +VH ++ DV +GSALVDMY+KCG++D A R F+ M + ++W SMI GY ++G +AL+LF M + P++VTF+G LSAC H+GLL +G + F+SM+ Sbjct: 638 GMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMS 748 HSP 2 Score: 27.7202 bits (60), Expect = 1.367e-22 Identity = 9/23 (39.13%), Postives = 14/23 (60.87%), Query Frame = 2 Query: 347 KHLTAWHRDYSMKPNMEHYACMA 415 KH + Y + P +EH++CMA Sbjct: 742 KHFESMSDSYGLAPRIEHFSCMA 764
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 1.781e-22 Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 1 Query: 19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETF 354 L L G+++H IKN DV +GSALVDMYAKCG + + +VFD + QK V TW +I YG +GN +A++L MM V+PN VTF+ +AC HSG++ +G F Sbjct: 530 LSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF 641 HSP 2 Score: 25.0238 bits (53), Expect = 1.781e-22 Identity = 7/14 (50.00%), Postives = 12/14 (85.71%), Query Frame = 2 Query: 371 DYSMKPNMEHYACM 412 DY ++P+ +HYAC+ Sbjct: 647 DYGVEPSSDHYACV 660 HSP 3 Score: 68.5514 bits (166), Expect = 1.147e-11 Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 1 Query: 19 LLILFPGQQVHCQLIKNVPFEDVK-LGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETEY 393 L +L G+++H +KN ++ +GSALVDMY C ++ RVFD M + + W +MI GY +N + +AL LF M+E + N T G + AC SG ++ + +R L+ + Sbjct: 315 LEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRF 441
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 4.204e-22 Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 1 Query: 19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 L +L G Q H ++K +D+ L +ALVDMY KCG ++DA RVF+ M+++ V TW++MI G +NG +AL+LF M+ +PNY+T +G L AC H+GLL G F SM Sbjct: 273 LALLELGMQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSM 385 HSP 2 Score: 65.4698 bits (158), Expect = 9.714e-11 Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 1 Query: 40 QQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRE 348 + +HC +IK DV + SAL+D++AK G+ +DA VFD M W S+I G+ +N + ALELF M+ T L AC LL G + Sbjct: 179 RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQ 281
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP315_ARATH (Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 8.725e-22 Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 G++ H +IK ++ + SALVDMY KC D RVFD + + V TWTS+I GYG +G ++ L+ F M+E +PN VTFL L+AC H GL+ KG E F SM Sbjct: 228 GKRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSM 336 HSP 2 Score: 26.1794 bits (56), Expect = 8.725e-22 Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 2 Query: 347 KHLTAWHRDYSMKPNMEHYACM 412 +H + RDY ++P +HYA M Sbjct: 331 EHFYSMKRDYGIEPEGQHYAAM 352
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 9.365e-22 Identity = 51/100 (51.00%), Postives = 70/100 (70.00%), Query Frame = 1 Query: 73 PFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369 P + V +GSAL+DMY+KCG +++A VF M K VFT++SMI G +G +AL LF M+ + ++PN VTF+GAL AC HSGL+ +GR+ FDSM Q Sbjct: 314 PSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQ 413 The following BLAST results are available for this feature:
BLAST of CX293319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 188
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293319 ID=CX293319; Name=CX293319; organism=Citrus clementina; type=EST; length=418bpback to top |