CX293319

Overview
NameCX293319
Unique NameCX293319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PPR62_ARATH (Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.531e-42
Identity = 74/109 (67.89%), Postives = 91/109 (83.49%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            GQQVH Q++K+  +  +K+GS+L+DMYAKCG I+DA RVFD MQ+K VF+WTSMIDGYGKNGNP +ALELF  M+E  ++PNYVTFLGALSAC HSGL+ KG E F+SM
Sbjct:  292 GQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESM 400          

HSP 2 Score: 34.6538 bits (78), Expect = 1.531e-42
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 2
Query:  368 RDYSMKPNMEHYACM 412
            RDYSMKP MEHYAC+
Sbjct:  402 RDYSMKPKMEHYACI 416          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.462e-24
Identity = 46/116 (39.66%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   16 CLLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            CL  L  G+Q+H   +K     D  +G++LVDMYAKCG IDDA  +F  ++   +  W +M+ G  ++G   + L+LF  M+   ++P+ VTF+G LSAC HSGL+++  +   SM
Sbjct:  630 CLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSM 745          

HSP 2 Score: 36.5798 bits (83), Expect = 4.462e-24
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 2
Query:  347 KHLTAWHRDYSMKPNMEHYACMA 415
            KH+ + H DY +KP +EHY+C+A
Sbjct:  740 KHMRSMHGDYGIKPEIEHYSCLA 762          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.854e-24
Identity = 49/109 (44.95%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            G+Q+H Q++K     +  + +AL+ MY+KCG ID A RVF+ M+ + V +WTSMI G+ K+G   + LE F  M E  V+PN VT++  LSAC H GL+++G   F+SM
Sbjct:  493 GEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSM 601          

HSP 2 Score: 33.8834 bits (76), Expect = 9.854e-24
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  347 KHLTAWHRDYSMKPNMEHYACM 412
            +H  + + D+ +KP MEHYACM
Sbjct:  596 RHFNSMYEDHKIKPKMEHYACM 617          

HSP 3 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKC---GKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGN-PNQALELFC-MMQECCVQPNYVTFLGALSACGH 321
            G+Q+H   I++   +DV+   +LVDMYAKC   G +DD  +VFD M+   V +WT++I GY KN N   +A+ LF  M+ +  V+PN+ TF  A  ACG+
Sbjct:  288 GKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.836e-23
Identity = 49/112 (43.75%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQR 372
            G+ +H Q+I+    +DV +G++++DMY KCG+++ A + FD M+ K V +WT+MI GYG +G+  +ALELF  M +  V+PNY+TF+  L+AC H+GL  +G   F++M  R
Sbjct:  306 GKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGR 417          

HSP 2 Score: 23.0978 bits (48), Expect = 2.836e-23
Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  374 YSMKPNMEHYACM 412
            + ++P +EHY CM
Sbjct:  418 FGVEPGLEHYGCM 430          

HSP 3 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELF 249
            L  +F G+Q H Q        D+ + SAL+ MY+ CGK++DA +VFD + ++ + +WTSMI GY  NGN   A+ LF
Sbjct:   89 LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLF 165          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.841e-23
Identity = 50/115 (43.48%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   28 LFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQR 372
            L  G++VHC +IKN    +   G+ L+D+Y KCG +++A  VF+ + +K V+TWT+MI+G+  +G    A +LF  M    V PN VTF+  LSAC H GL+ +GR  F SM  R
Sbjct:  322 LHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGR 436          

HSP 2 Score: 24.2534 bits (51), Expect = 2.841e-23
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  374 YSMKPNMEHYACM 412
            ++M+P  +HYACM
Sbjct:  437 FNMEPKADHYACM 449          

HSP 3 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   82 DVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGR 345
            DV +GS+LVDMY KC   DDA +VFD M  + V TWT++I GY ++   ++ + +F  M +  V PN  T    LSAC H G L +GR
Sbjct:  239 DVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGR 326          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.367e-22
Identity = 50/111 (45.05%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMA 366
            G +VH   ++     DV +GSALVDMY+KCG++D A R F+ M  +  ++W SMI GY ++G   +AL+LF  M  +    P++VTF+G LSAC H+GLL +G + F+SM+
Sbjct:  638 GMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMS 748          

HSP 2 Score: 27.7202 bits (60), Expect = 1.367e-22
Identity = 9/23 (39.13%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  347 KHLTAWHRDYSMKPNMEHYACMA 415
            KH  +    Y + P +EH++CMA
Sbjct:  742 KHFESMSDSYGLAPRIEHFSCMA 764          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.781e-22
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETF 354
            L  L  G+++H   IKN    DV +GSALVDMYAKCG +  + +VFD + QK V TW  +I  YG +GN  +A++L  MM    V+PN VTF+   +AC HSG++ +G   F
Sbjct:  530 LSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF 641          

HSP 2 Score: 25.0238 bits (53), Expect = 1.781e-22
Identity = 7/14 (50.00%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  371 DYSMKPNMEHYACM 412
            DY ++P+ +HYAC+
Sbjct:  647 DYGVEPSSDHYACV 660          

HSP 3 Score: 68.5514 bits (166), Expect = 1.147e-11
Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 1
Query:   19 LLILFPGQQVHCQLIKNVPFEDVK-LGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETEY 393
            L +L  G+++H   +KN   ++   +GSALVDMY  C ++    RVFD M  + +  W +MI GY +N +  +AL LF  M+E   +  N  T  G + AC  SG  ++       + +R L+   +
Sbjct:  315 LEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRF 441          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.204e-22
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 1
Query:   19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            L +L  G Q H  ++K    +D+ L +ALVDMY KCG ++DA RVF+ M+++ V TW++MI G  +NG   +AL+LF  M+    +PNY+T +G L AC H+GLL  G   F SM
Sbjct:  273 LALLELGMQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSM 385          

HSP 2 Score: 65.4698 bits (158), Expect = 9.714e-11
Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 1
Query:   40 QQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRE 348
            + +HC +IK     DV + SAL+D++AK G+ +DA  VFD M       W S+I G+ +N   + ALELF  M+         T    L AC    LL  G +
Sbjct:  179 RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQ 281          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP315_ARATH (Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 8.725e-22
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            G++ H  +IK     ++ + SALVDMY KC    D  RVFD +  + V TWTS+I GYG +G  ++ L+ F  M+E   +PN VTFL  L+AC H GL+ KG E F SM
Sbjct:  228 GKRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSM 336          

HSP 2 Score: 26.1794 bits (56), Expect = 8.725e-22
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  347 KHLTAWHRDYSMKPNMEHYACM 412
            +H  +  RDY ++P  +HYA M
Sbjct:  331 EHFYSMKRDYGIEPEGQHYAAM 352          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.365e-22
Identity = 51/100 (51.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:   73 PFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369
            P + V +GSAL+DMY+KCG +++A  VF  M  K VFT++SMI G   +G   +AL LF  M+ +  ++PN VTF+GAL AC HSGL+ +GR+ FDSM Q
Sbjct:  314 PSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQ 413          
The following BLAST results are available for this feature:
BLAST of CX293319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PPR62_ARATH1.531e-4267.89Pentatricopeptide repeat-containing protein At1g28... [more]
PP347_ARATH4.462e-2439.66Pentatricopeptide repeat-containing protein At4g33... [more]
PP272_ARATH9.854e-2444.95Pentatricopeptide repeat-containing protein At3g49... [more]
PP258_ARATH2.836e-2343.75Pentatricopeptide repeat-containing protein At3g26... [more]
PPR75_ARATH2.841e-2343.48Pentatricopeptide repeat-containing protein At1g50... [more]
PP373_ARATH1.367e-2245.05Putative pentatricopeptide repeat-containing prote... [more]
PP285_ARATH1.781e-2245.54Pentatricopeptide repeat-containing protein At3g57... [more]
PP147_ARATH4.204e-2245.22Pentatricopeptide repeat-containing protein At2g03... [more]
PP315_ARATH8.725e-2245.87Pentatricopeptide repeat-containing protein At4g16... [more]
PP417_ARATH9.365e-2251.00Pentatricopeptide repeat-containing protein At5g44... [more]

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Properties
Property NameValue
Genbank descriptionC04030C07SK FlavFr1 Citrus clementina cDNA clone C04030C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293319 ID=CX293319; Name=CX293319; organism=Citrus clementina; type=EST; length=418bp
TTGGAGCTTGCTCTGTGTTTACTGATTTTGTTTCCCGGTCAACAGGTTCA
TTGCCAACTTATTAAGAATGTGCCCTTTGAGGATGTAAAACTGGGAAGTG
CTCTTGTGGACATGTATGCAAAATGTGGAAAGATTGATGATGCTCCAAGA
GTTTTTGACCACATGCAACAAAAGATCGTGTTTACATGGACTTCCATGAT
TGATGGTTATGGAAAGAATGGGAACCCGAATCAAGCACTTGAGCTCTTTT
GTATGATGCAAGAATGTTGCGTCCAACCCAATTATGTTACATTCCTTGGT
GCTCTCTCGGCTTGTGGACACTCTGGTTTACTTGCTAAAGGTCGCGAAAC
ATTTGACAGCATGGCACAGAGATTACTCAATGAAACCGAATATGGAACAT
TATGCTTGTATGGCCCAT
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