CX293323

Overview
NameCX293323
Unique NameCX293323
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293323 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.244e-29
Identity = 58/95 (61.05%), Postives = 76/95 (80.00%), Query Frame = 2
Query:   14 IVNGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPTSERNYGLYYPNGNPVYNIGIKGYLPEMDYSSASPKIKILPVCLSLLIYVIAYLI 298
            + NGNLLK IQQ++GTP K SVP+DVY FALFNENLKPGP SERNYGL+YP+G PVYN+G++GYLP++ Y+S +  IKIL +   ++   +A+ I
Sbjct:  288 LYNGNLLKLIQQRKGTPAKQSVPIDVYVFALFNENLKPGPVSERNYGLFYPDGKPVYNVGMQGYLPDIIYTSRATTIKILNLWRVVMGLAVAWFI 382          
BLAST of CX293323 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.482e-15
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 2
Query:   11 RIVNGNLLKRIQQKQ-GTPGKPSVPVDVYFFALFNENLKPGPTSERNYGLYYPNGNPVYNIGIK 199
            R  NGNL+K +  K+  TP +P   + ++ FALFNEN+KPGPTSERNYGL+ P+G PVY++GIK
Sbjct:  286 RKYNGNLIKMMMSKKMRTPIRPECDLTIFVFALFNENMKPGPTSERNYGLFNPDGTPVYSLGIK 349          
BLAST of CX293323 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.910e-13
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:   20 NGNLLKRIQ--QKQGTPGKPSVPVDVYFFALFNENLKPGPTSERNYGLYYPNGNPVYNIG 193
            NGNL+K +   +K  TP KP+  + +Y FALFNENLKPGPTSERNYGL+ P+G   Y++G
Sbjct:  289 NGNLIKMMMSGKKTKTPLKPNNDLSIYVFALFNENLKPGPTSERNYGLFKPDGTQAYSLG 348          
BLAST of CX293323 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   20 NGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPTSERNYGLYYPNGNPVYNIGIKGYLPEMDYSSASPKIKI 250
            NGNL+  ++   GTP  P  PVD Y FAL++ENLKPGP+SER +GL+  + + VY++G    L +   SS +P  K+
Sbjct:  287 NGNLIAHLRSMVGTPLMPGKPVDTYIFALYDENLKPGPSSERAFGLFKTDLSMVYDVG----LAKSSSSSQTPSGKV 359          
BLAST of CX293323 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 2
Query:   20 NGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPTSERNYGLYYPNGNPVYNIGIKG 202
            N NL++ +  K GTP  P   V  Y + L+NE+ +PGP SE+N+GL+Y NG PVY + + G
Sbjct:  286 NSNLIQHVINKTGTPKHPGTAVTTYIYELYNEDTRPGPVSEKNWGLFYTNGTPVYTLRLAG 346          
BLAST of CX293323 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 2
Query:   20 NGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPTSERNYGLYYPNGNPVYNIGIKG 202
            N NL++ +    GTP KP   +DVY F+LFNEN KPG  SERN+G++Y NG  VY +   G
Sbjct:  287 NTNLIRHVIGDPGTPAKPGEEIDVYLFSLFNENRKPGIESERNWGMFYANGTNVYALDFTG 347          
BLAST of CX293323 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.027e-12
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 2
Query:   20 NGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPTSERNYGLYYPNGNPVYNIGIKG 202
            N NL+KR+    G P +P +P++ Y + L+NE+ + GP SERN+G+ +PNG  VY + + G
Sbjct:  289 NTNLIKRVLNNSGPPSQPDIPINTYIYELYNEDKRSGPVSERNWGILFPNGTSVYPLSLSG 349          
BLAST of CX293323 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.050e-11
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 2
Query:   20 NGNLLKRIQQKQGTPGKPSVPVDVYFFALFNENLKPGPTSERNYGLYYPNGNPVYNIGIKG 202
            N N+++ +   QGTP KP   ++VY F+LFNEN K G  SERN+GL+YP+   VY +   G
Sbjct:  288 NSNIIRHVVTNQGTPAKPGEAMNVYIFSLFNENRKAGLDSERNWGLFYPDQTSVYQLDFTG 348          
The following BLAST results are available for this feature:
BLAST of CX293323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
E1314_ARATH3.244e-2961.05Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
E1310_ARATH3.482e-1557.81Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
E1311_ARATH1.910e-1358.33Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E137_ARATH6.146e-1245.45Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E133_ARATH6.146e-1245.90Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E1312_ARATH6.146e-1250.82Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E134_ARATH8.027e-1242.62Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E1313_ARATH3.050e-1147.54Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC04030D02SK FlavFr1 Citrus clementina cDNA clone C04030D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293323 ID=CX293323; Name=CX293323; organism=Citrus clementina; type=EST; length=550bp
CGGCCGAGGCAGAATTGTCAATGGGAACTTGCTGAAAAGGATACAGCAGA
AGCAAGGCACCCCTGGAAAACCATCAGTTCCTGTTGACGTCTATTTTTTT
GCACTTTTTAATGAGAATTTGAAGCCCGGTCCGACGTCAGAGAGAAATTA
TGGACTCTATTATCCTAATGGTAACCCAGTTTATAACATTGGAATAAAAG
GGTATCTTCCAGAAATGGACTATTCTTCAGCATCACCCAAGATTAAGATT
TTGCCAGTATGCTTGAGTCTTCTGATCTATGTTATAGCATATTTAATCTA
TGCATAAAAGCTCGAGAAATCGTCTAACTGAGGAGGGGGAGCTAGAGACC
ACAGAAGAATAGATAACAAAATTACTAATTAATATACATATTATTCATAT
GCCAGTAGAGATGTAGGTAAGGTATTGAAATTCCTTTTTGTTTGGTCAAA
GAGTCAGAAACACCAATTTCAACGAACAATATAATTCTGTTACTCAAAAA
AAAAAAAAAAAAAAACTCGGGGGGGGGCCCGGACCCCATTTCCCCCTATA
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