CX293325

Overview
NameCX293325
Unique NameCX293325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293325 vs. ExPASy Swiss-Prot
Match: DPM2_CRIGR (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Cricetulus griseus GN=DPM2 PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.657e-17
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  210 DRIVGFLLSFISLSTFTYYTFWVIILPFVDSDHFIHQYFLPQEYAIFIPVFAGVVLLCFLCIFIGFVIL 416
            D++VGF L  +SL  FTYYT WVI+LPF+DS H IH+YFLP+ YA+ IP+  G++LL F+ +FI +V+L
Sbjct:    6 DQVVGFGLVAVSLIIFTYYTTWVILLPFIDSQHVIHKYFLPRAYAVLIPLATGLLLLLFVGLFITYVML 74          
BLAST of CX293325 vs. ExPASy Swiss-Prot
Match: DPM2_RAT (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Rattus norvegicus GN=Dpm2 PE=3 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.164e-17
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  210 DRIVGFLLSFISLSTFTYYTFWVIILPFVDSDHFIHQYFLPQEYAIFIPVFAGVVLLCFLCIFIGFVIL 416
            D+ VGF L  +SL  FTYYT WVI+LPF+DS H IH+YFLP+ YA+ +P+ AG++LL F+ +FI +V+L
Sbjct:    6 DQAVGFGLVAVSLIIFTYYTTWVILLPFIDSQHVIHKYFLPRAYAVLLPLAAGLLLLLFVGLFITYVLL 74          
BLAST of CX293325 vs. ExPASy Swiss-Prot
Match: DPM2_MOUSE (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Mus musculus GN=Dpm2 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.826e-17
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  210 DRIVGFLLSFISLSTFTYYTFWVIILPFVDSDHFIHQYFLPQEYAIFIPVFAGVVLLCFLCIFIGFVIL 416
            D+ VGF L  +SL  FTYYT WVI+LPF+DS H IH+YFLP+ YA+ +P+ AG++LL F+ +FI +V+L
Sbjct:    6 DQAVGFGLVAVSLIIFTYYTTWVILLPFIDSQHVIHKYFLPRAYAVLLPLAAGLLLLLFVGLFITYVML 74          
BLAST of CX293325 vs. ExPASy Swiss-Prot
Match: DPM2_HUMAN (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Homo sapiens GN=DPM2 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.826e-17
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  210 DRIVGFLLSFISLSTFTYYTFWVIILPFVDSDHFIHQYFLPQEYAIFIPVFAGVVLLCFLCIFIGFVIL 416
            D++VG  L  +SL  FTYYT WVI+LPF+DS H IH+YFLP+ YA+ IP+ AG++LL F+ +FI +V+L
Sbjct:    6 DQVVGLGLVAVSLIIFTYYTAWVILLPFIDSQHVIHKYFLPRAYAVAIPLAAGLLLLLFVGLFISYVML 74          
BLAST of CX293325 vs. ExPASy Swiss-Prot
Match: DPM2_BOVIN (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Bos taurus GN=DPM2 PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 8.222e-17
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  210 DRIVGFLLSFISLSTFTYYTFWVIILPFVDSDHFIHQYFLPQEYAIFIPVFAGVVLLCFLCIFIGFVIL 416
            D++VG  L  +SL  FTYYT WVI+LPF+DS H IH+YFLP+ YAI IP+ AG +LL F+ IFI +V+L
Sbjct:    6 DQVVGLGLVALSLIIFTYYTAWVILLPFIDSQHVIHKYFLPRAYAIAIPLAAGHLLLLFVGIFITYVML 74          
BLAST of CX293325 vs. ExPASy Swiss-Prot
Match: DPM2_DICDI (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Dictyostelium discoideum GN=dpm2-1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.515e-13
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  198 MELADRIVGFLLSFISLSTFTYYTFWVIILPFVDSDHFIHQYFLPQEYAIFIPVFAGVVLLCFLCIFIGFVIL 416
            M  +D+ +GF++    +  F YYT WVII PF+ SDH+I QYFLP+EY I IP+   VV +  +  F+G V++
Sbjct:    1 MGASDKFIGFVMVLFRIFVFGYYTTWVIITPFIVSDHWIQQYFLPREYGIIIPLVLLVVGITAIGTFLGLVMI 73          
The following BLAST results are available for this feature:
BLAST of CX293325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DPM2_CRIGR1.657e-1756.52Dolichol phosphate-mannose biosynthesis regulatory... [more]
DPM2_RAT2.164e-1756.52Dolichol phosphate-mannose biosynthesis regulatory... [more]
DPM2_MOUSE2.826e-1756.52Dolichol phosphate-mannose biosynthesis regulatory... [more]
DPM2_HUMAN2.826e-1756.52Dolichol phosphate-mannose biosynthesis regulatory... [more]
DPM2_BOVIN8.222e-1759.42Dolichol phosphate-mannose biosynthesis regulatory... [more]
DPM2_DICDI5.515e-1345.21Dolichol phosphate-mannose biosynthesis regulatory... [more]
back to top
Properties
Property NameValue
Genbank descriptionC04030D05SK FlavFr1 Citrus clementina cDNA clone C04030D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293325 ID=CX293325; Name=CX293325; organism=Citrus clementina; type=EST; length=492bp
TTGTTCAATTGAGAAACGGAGATCAAAATATGTTCATTTGATTTGGATCT
GGACTATTTAGATACCCGATCCAGTTCTGGAGCCCAAATGGAGCCCAGTT
TTAAAATAGTAAGAGAAGTGAAGCAGAAACCTTCTTCTCATTTCCGCTAT
TGAAAATTCTTCCGACGATTAACAGACAGTTGAAGCTGAAAATCCAAATG
GAATTAGCGGACAGAATAGTTGGGTTCTTATTATCTTTTATCAGCTTATC
AACATTCACCTACTACACATTTTGGGTCATCATTCTGCCATTTGTAGACA
GTGATCACTTCATCCACCAATATTTCCTACCTCAAGAATACGCCATATTT
ATACCTGTATTTGCTGGTGTGGTACTTCTCTGCTTCTTATGCATATTTAT
CGGGTTTGTGATCCTCAAGTCCAAAAAGAAGAAGGCATGATGCAAGGTTT
TCATATGCTTCCTACACATTGAATTTTTACCTTTGGCTGTTG
back to top