CX293326

Overview
NameCX293326
Unique NameCX293326
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293326 vs. ExPASy Swiss-Prot
Match: GST11_ARATH (Glutathione S-transferase 11 OS=Arabidopsis thaliana GN=GST11 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 3.900e-18
Identity = 44/59 (74.58%), Postives = 47/59 (79.66%), Query Frame = 3
Query:    6 RLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 182
            RL +SKYLA D FTLVDLH +P I  LLGTP KKLFD RPHVSAW ADITSRP+  KVL
Sbjct:  151 RLGESKYLASDKFTLVDLHTIPVIQYLLGTPTKKLFDERPHVSAWVADITSRPSAKKVL 209          
BLAST of CX293326 vs. ExPASy Swiss-Prot
Match: GSTF_HYOMU (Glutathione S-transferase OS=Hyoscyamus muticus PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.094e-18
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 3
Query:    3 ARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 182
            +RL  SKYL  DSFTL DLHH P +N L+GT VK LFD+RPHVSAW ADI +RPAW+K +
Sbjct:  149 SRLKDSKYLGGDSFTLADLHHAPAMNYLMGTKVKSLFDSRPHVSAWCADILARPAWSKAI 208          
BLAST of CX293326 vs. ExPASy Swiss-Prot
Match: GSTF1_ARATH (Glutathione S-transferase 1 OS=Arabidopsis thaliana GN=GST1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.094e-18
Identity = 44/59 (74.58%), Postives = 47/59 (79.66%), Query Frame = 3
Query:    6 RLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 182
            RL +SKYLA D FTLVDLH +P I  LLGTP KKLFD RPHVSAW ADITSRP+  KVL
Sbjct:  150 RLGESKYLASDHFTLVDLHTIPVIQYLLGTPTKKLFDERPHVSAWVADITSRPSAQKVL 208          
BLAST of CX293326 vs. ExPASy Swiss-Prot
Match: GSTF2_TOBAC (Glutathione S-transferase APIC OS=Nicotiana tabacum GN=APIC PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.482e-17
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 3
Query:    6 RLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 194
            RL++SKYL  DSFTLVDLHH+PNI  L+ T VK++FD+RP VSAW ADI +RPAW K L  L+
Sbjct:  150 RLAESKYLGGDSFTLVDLHHIPNIYYLMSTKVKEVFDSRPRVSAWCADILARPAWVKGLEKLQ 212          
BLAST of CX293326 vs. ExPASy Swiss-Prot
Match: GSTF1_TOBAC (Glutathione S-transferase PARB OS=Nicotiana tabacum GN=PARB PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.255e-16
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 3
Query:    6 RLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 194
            +L++SKYL  DSFTLVDLHH+PNI  L+ + VK++FD+RP VSAW ADI +RPAW K L  L+
Sbjct:  150 QLAESKYLGGDSFTLVDLHHIPNIYYLMSSKVKEVFDSRPRVSAWCADILARPAWVKGLEKLQ 212          
BLAST of CX293326 vs. ExPASy Swiss-Prot
Match: GSTF6_ARATH (Glutathione S-transferase 6, chloroplastic OS=Arabidopsis thaliana GN=GST6 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.795e-16
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 3
Query:    3 ARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 194
            ARL++S++LA DSFTL DLHHLP I+ LLGT  K LFD+RP VS W   I++RPAWAKV+ L K
Sbjct:  199 ARLAKSEFLAGDSFTLADLHHLPAIHYLLGTDSKVLFDSRPKVSEWIKKISARPAWAKVIDLQK 262          
BLAST of CX293326 vs. ExPASy Swiss-Prot
Match: GSTF_SILCU (Glutathione S-transferase OS=Silene cucubalus GN=GST PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 3.650e-16
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 3
Query:    3 ARLSQSKYL-ACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 194
            ARL++S+YL A DSFTLVDLHHLP +  L+GT VKKLF+ R HVSAW   I +RP+W K LAL K
Sbjct:  151 ARLTESEYLGANDSFTLVDLHHLPLLGYLMGTQVKKLFEERAHVSAWCKKILARPSWEKTLALQK 215          
BLAST of CX293326 vs. ExPASy Swiss-Prot
Match: GST16_ARATH (Glutathione S-transferase 16 OS=Arabidopsis thaliana GN=GST16 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.991e-15
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    3 ARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 182
            ARL + KYLA ++FTL DLHH+P I  LLGTP KKLF  RP V+ W A+IT RPA  KVL
Sbjct:  153 ARLKEFKYLAGETFTLTDLHHIPVIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVL 212          
BLAST of CX293326 vs. ExPASy Swiss-Prot
Match: GSTF4_ARATH (Glutathione S-transferase PM24 OS=Arabidopsis thaliana GN=PM24.1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.003e-14
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 3
Query:    3 ARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKV 179
            ARL + KYLA ++FTL DLHH+P I  LLGTP KKLF  RP V+ W A+IT RPA  KV
Sbjct:  153 ARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKV 211          
The following BLAST results are available for this feature:
BLAST of CX293326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GST11_ARATH3.900e-1874.58Glutathione S-transferase 11 OS=Arabidopsis thalia... [more]
GSTF_HYOMU5.094e-1866.67Glutathione S-transferase OS=Hyoscyamus muticus PE... [more]
GSTF1_ARATH5.094e-1874.58Glutathione S-transferase 1 OS=Arabidopsis thalian... [more]
GSTF2_TOBAC1.482e-1765.08Glutathione S-transferase APIC OS=Nicotiana tabacu... [more]
GSTF1_TOBAC1.255e-1661.90Glutathione S-transferase PARB OS=Nicotiana tabacu... [more]
GSTF6_ARATH2.795e-1664.06Glutathione S-transferase 6, chloroplastic OS=Arab... [more]
GSTF_SILCU3.650e-1664.62Glutathione S-transferase OS=Silene cucubalus GN=G... [more]
GST16_ARATH8.991e-1563.33Glutathione S-transferase 16 OS=Arabidopsis thalia... [more]
GSTF4_ARATH2.003e-1462.71Glutathione S-transferase PM24 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC04030D06SK FlavFr1 Citrus clementina cDNA clone C04030D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293326 ID=CX293326; Name=CX293326; organism=Citrus clementina; type=EST; length=470bp
AGGCCCGTTTGTCTCAGTCCAAATACTTGGCGTGCGACAGCTTCACCTTG
GTCGATTTGCATCATCTCCCCAATATTAATTTGTTGTTGGGGACGCCTGT
CAAGAAGCTGTTTGATGCACGCCCCCATGTTAGCGCATGGGCAGCTGATA
TCACTTCCAGACCGGCTTGGGCTAAGGTCCTTGCCTTGCTCAAACACTGA
ACACTCTGCCCGCTACCTACTAGACGTTAGTCGCTCCTCGGTGGTCACTT
ATCTTTTGTAATACCTATTAGGCTGGTTTTCGAGTTCGTATTCTCTTGTT
TGGCGTTTGTCATCAATATTCTGCAGAATATTGATGCTTTGTAGTTTGTA
CTACCGCTTTTGTATTTCAACAGCACTGCCTCATATTCAACTTTGATGTT
GATGGCTTGAGGTTTTTATTTTATCTATGTACCCTAATAAAACGAAGCTG
GAGATATTCTGCGAAAAAAA
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