CX293470

Overview
NameCX293470
Unique NameCX293470
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293470 vs. ExPASy Swiss-Prot
Match: PGIP_PYRCO (Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.076e-61
Identity = 113/146 (77.40%), Postives = 123/146 (84.25%), Query Frame = 3
Query:    6 SFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESCK 443
            SFG F G++PDLYLSHNQLSG IP S   MDF +IDLSRNKLEGDAS +FGLNKTTQ +D+SRNLLEFNLSKVEFP SLT+LD+NHNKI+GSIP + T L N  FLNVSYNRLCG IPVGGKLQSF    YFHNRCLCGAPL SCK
Sbjct:  186 SFGQFIGNVPDLYLSHNQLSGNIPTSFAQMDFTSIDLSRNKLEGDASVIFGLNKTTQIVDLSRNLLEFNLSKVEFPTSLTSLDINHNKIYGSIPVEFTQL-NFQFLNVSYNRLCGQIPVGGKLQSFDEYSYFHNRCLCGAPLPSCK 330          
BLAST of CX293470 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.498e-55
Identity = 104/147 (70.75%), Postives = 119/147 (80.95%), Query Frame = 3
Query:    3 ESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESCK 443
            +SFG F GS P L+LSHNQLSGKIP S    D N +DLSRNKLEGD S  F  NK+TQ +D SRNL +F+LS+VEFP+SLT+LDL+HNKI GS+P  +TSL+ L FLNVSYNRLCG IPVGGKLQSF Y  YFHNRCLCGAPL+SCK
Sbjct:  188 DSFGKFAGSTPGLHLSHNQLSGKIPYSFRGFDPNVMDLSRNKLEGDLSIFFNANKSTQIVDFSRNLFQFDLSRVEFPKSLTSLDLSHNKIAGSLPEMMTSLD-LQFLNVSYNRLCGKIPVGGKLQSFDYDSYFHNRCLCGAPLQSCK 333          
BLAST of CX293470 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.794e-52
Identity = 99/147 (67.35%), Postives = 117/147 (79.59%), Query Frame = 3
Query:    3 ESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESCK 443
            ESFG+F G++PDL LSHNQLSG IP SLG++DFN IDLSRNKL+GDAS LFG NKTT  ID+SRN+ +F++SKV+ P++L  LDLNHN I G+IP Q T    L F NVSYN+LCG IP GGKLQ+F    YFHN+CLCGAPLE CK
Sbjct:  185 ESFGSFPGTVPDLRLSHNQLSGPIPKSLGNIDFNRIDLSRNKLQGDASMLFGSNKTTWSIDLSRNMFQFDISKVDIPKTLGILDLNHNGITGNIPVQWTEAP-LQFFNVSYNKLCGHIPTGGKLQTFDSYSYFHNKCLCGAPLEICK 330          
BLAST of CX293470 vs. ExPASy Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.241e-47
Identity = 93/147 (63.27%), Postives = 111/147 (75.51%), Query Frame = 3
Query:    3 ESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESCK 443
            ESFGTF+G +P L+LSHNQLSG IP SLG+ DF  IDLSRNKL+GDAS LFG  KTT  +D+SRN+ +F+LSKV+  ++L NLD+NHN I GSIPA+  S      LNVSYNRLCG IP G  +Q F    +FHN+CLCGAPL SCK
Sbjct:  185 ESFGTFSGKVPSLFLSHNQLSGTIPKSLGNPDFYRIDLSRNKLQGDASILFGAKKTTWIVDISRNMFQFDLSKVKLAKTLNNLDMNHNGITGSIPAE-WSKAYFQLLNVSYNRLCGRIPKGEYIQRFDSYSFFHNKCLCGAPLPSCK 330          
BLAST of CX293470 vs. ExPASy Swiss-Prot
Match: PGIP3_PHAVU (Polygalacturonase inhibitor 3 OS=Phaseolus vulgaris GN=PGIP3 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 68/146 (46.58%), Postives = 104/146 (71.23%), Query Frame = 3
Query:    3 ESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESC 440
            +S+G+F+     + +S N+L+GKIP +  +++   +DLSRN L+GDAS LFG +K TQ+I +++N L+F+L KV   ++L  LDL +N+I+G++P  +T L+ L  LNVS+N LCG IP GG LQ F  + Y +N+CLCG+PL +C
Sbjct:  196 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLQGDASVLFGSDKNTQKIHLAKNSLDFDLEKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 341          
BLAST of CX293470 vs. ExPASy Swiss-Prot
Match: PGIP2_PHAVU (Polygalacturonase inhibitor 2 OS=Phaseolus vulgaris GN=PGIP2 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = 3
Query:    3 ESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESC 440
            +S+G+F+     + +S N+L+GKIP +  +++   +DLSRN LEGDAS LFG +K TQ+I +++N L F+L KV   ++L  LDL +N+I+G++P  +T L+ L  LNVS+N LCG IP GG LQ F  + Y +N+CLCG+PL +C
Sbjct:  196 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 341          
BLAST of CX293470 vs. ExPASy Swiss-Prot
Match: PGIP1_PHAVU (Polygalacturonase inhibitor 1 OS=Phaseolus vulgaris GN=PGIP1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 68/146 (46.58%), Postives = 103/146 (70.55%), Query Frame = 3
Query:    3 ESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESC 440
            +S+G+F+     + +S N+L+GKIP +  +++   +DLSRN LEGDAS LFG +K T++I +++N L F+L KV   ++L  LDL +N+I+G++P  +T L+ L  LNVS+N LCG IP GG L+ F  + Y +N+CLCG+PL SC
Sbjct:  196 DSYGSFSKLFTAMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTKKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLQSLNVSFNNLCGEIPQGGNLKRFDVSSYANNKCLCGSPLPSC 341          
BLAST of CX293470 vs. ExPASy Swiss-Prot
Match: PGIP1_ORYSJ (Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.118e-30
Identity = 67/143 (46.85%), Postives = 90/143 (62.94%), Query Frame = 3
Query:   12 GTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESC 440
            G   G    L LS+NQL+G IP      + NT+DLS N+L GDASFLF   +   ++D+S N L+F+LSK+ FP  LT LDL+HN+I G++P  + +L  L  L++SYNRLCGP+P    +   G   Y HN+C  GAPL  C
Sbjct:  187 GLVQGQFRSLILSYNQLTGPIPRDDAQDEINTVDLSHNRLTGDASFLFAAGRPIGKVDLSWNDLDFDLSKLVFPPELTYLDLSHNRIRGTVPRSLAALSTLQTLDLSYNRLCGPLPRLHGVIRHGCKPYEHNQCAGGAPLGGC 329          
BLAST of CX293470 vs. ExPASy Swiss-Prot
Match: DR100_ARATH (DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.490e-16
Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = 3
Query:   21 TGSIP----------DLYLSHNQLSGKIPASLGSMD-FNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQS-LTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPL 431
            TGSIP          DL LS N + G IP  +G+M   + ++L  N L G        N      ++SRN LE  +  V   ++ L +LDL+HN + G IP  ++S + +G L++S+N+LCG IP G        T +  N+CLCG PL
Sbjct:  220 TGSIPESISGMERLADLDLSKNHIEGPIPEWMGNMKVLSLLNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIPDVFGSKTYLVSLDLSHNSLSGRIPDSLSSAKFVGHLDISHNKLCGRIPTGFPFDHLEATSFSDNQCLCGGPL 368          
BLAST of CX293470 vs. ExPASy Swiss-Prot
Match: ERL2_ARATH (LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.583e-15
Identity = 58/151 (38.41%), Postives = 79/151 (52.32%), Query Frame = 3
Query:    6 SFGTFTGSIP----------DLYLSHNQLSGKIPASLGSMDFNTI-DLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNL-SKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCG 422
            S  +F G IP           L LS N  SG IP +LG ++   I +LSRN L G     FG  ++ Q IDVS N L   + +++   Q++ +L LN+NKI G IP Q+T+  +L  LN+S+N L G IP       F    +F N  LCG
Sbjct:  416 SSNSFKGKIPAELGHIINLDTLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLNGTLPAEFGNLRSIQIIDVSFNFLAGVIPTELGQLQNINSLILNNNKIHGKIPDQLTNCFSLANLNISFNNLSGIIPPMKNFTRFSPASFFGNPFLCG 566          
The following BLAST results are available for this feature:
BLAST of CX293470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PGIP_PYRCO6.076e-6177.40Polygalacturonase inhibitor OS=Pyrus communis GN=P... [more]
PGIP_VITVI8.498e-5570.75Polygalacturonase inhibitor OS=Vitis vinifera GN=p... [more]
PGIP1_ARATH8.794e-5267.35Polygalacturonase inhibitor 1 OS=Arabidopsis thali... [more]
PGIP2_ARATH2.241e-4763.27Polygalacturonase inhibitor 2 OS=Arabidopsis thali... [more]
PGIP3_PHAVU1.968e-3546.58Polygalacturonase inhibitor 3 OS=Phaseolus vulgari... [more]
PGIP2_PHAVU1.968e-3547.26Polygalacturonase inhibitor 2 OS=Phaseolus vulgari... [more]
PGIP1_PHAVU9.768e-3546.58Polygalacturonase inhibitor 1 OS=Phaseolus vulgari... [more]
PGIP1_ORYSJ1.118e-3046.85Polygalacturonase inhibitor 1 OS=Oryza sativa subs... [more]
DR100_ARATH3.490e-1636.24DNA-damage-repair/toleration protein DRT100 OS=Ara... [more]
ERL2_ARATH6.583e-1538.41LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionC04032B04SK FlavFr1 Citrus clementina cDNA clone C04032B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293470 ID=CX293470; Name=CX293470; organism=Citrus clementina; type=EST; length=662bp
CGGAGTCTTTTGGTACATTCACCGGGAGTATACCTGATCTTTACTTGTCA
CATAACCAGCTCTCTGGCAAAATCCCTGCCTCTTTAGGCAGCATGGATTT
TAACACCATTGACTTGTCCAGGAACAAGCTTGAAGGCGATGCTTCGTTCT
TGTTCGGGTTGAACAAGACGACGCAGAGAATTGATGTTTCAAGAAACTTG
TTGGAATTTAATCTGTCCAAGGTTGAGTTTCCACAGAGCTTGACAAATTT
GGATTTGAATCACAACAAGATATTCGGGAGCATTCCTGCTCAAATTACTT
CGCTAGAGAATCTAGGATTCTTGAATGTCAGTTACAACAGGTTGTGTGGG
CCGATTCCCGTGGGGGGAAAGTTGCAGAGCTTTGGATACACGGAGTATTT
TCATAATAGGTGCTTGTGTGGCGCGCCCCTCGAAAGCTGCAAGTGAATAC
AGTGACTGGAATTGCACTTTCAGTGTATTGTATTTGTATTGTAGGCTTAT
ATATAAATTGAATATCAGCAGCATACTGTGTTTAAAAGTATCACAAAGAT
GATGCTTCATGGGGATGGGTAAGAAGCTTTTATTGATTGTTCATTATTTA
ATGTAACAAGAAGTCTATGTATGATTCGAATAATAAAACTTATTATAAGA
AGCTGGCACACC
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