CX293484

Overview
NameCX293484
Unique NameCX293484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length307
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PAL1_SOYBN (Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PAL1 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.396e-43
Identity = 87/102 (85.29%), Postives = 90/102 (88.24%), Query Frame = 2 
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGTAVGSGL SMVLFEAN LA+LSE+LS IFAEVM GK EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY+  AKKLHEIDPL KPKQDRYALRTS
Sbjct:  252 GLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTS 353
[Close]
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PALY_MEDSA (Phenylalanine ammonia-lyase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.659e-43
Identity = 87/102 (85.29%), Postives = 90/102 (88.24%), Query Frame = 2 
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGTAVGSGL S+VLFEAN LA+LSE+LS IFAEVM GK EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  AKKLHEIDPL KPKQDRYALRTS
Sbjct:  264 GLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTS 365
[Close]
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PALY_CAMSI (Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.152e-42
Identity = 86/102 (84.31%), Postives = 90/102 (88.24%), Query Frame = 2 
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGTAVGSGL SMVLFEAN LA+LSE+LS IFAEVM GK EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  A+KLHE+DPL KPKQDRYALRTS
Sbjct:  253 GLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTS 354
[Close]
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PAL2_PHAVU (Phenylalanine ammonia-lyase class 2 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.152e-42
Identity = 85/102 (83.33%), Postives = 90/102 (88.24%), Query Frame = 2 
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGTAVGSGL S+VLFEAN LA+LSE++S IFAEVM GK EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY+  AKKLHEIDPL KPKQDRYALRTS
Sbjct:  251 GLALVNGTAVGSGLASIVLFEANILAVLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEIDPLQKPKQDRYALRTS 352
[Close]
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PAL4_POPKI (Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.810e-42
Identity = 85/102 (83.33%), Postives = 89/102 (87.25%), Query Frame = 2 
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGTAVGSGL SMVLFE N LA+LSE+LS IFAEVM GK EFTDHLTHKLKHHPGQIEAAA+MEHILDGSSYV  A+KLHEIDPL KPKQDRYALRTS
Sbjct:  109 GLALVNGTAVGSGLASMVLFETNVLAILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAVMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTS 210
[Close]
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PALY_STYHU (Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.670e-42
Identity = 86/102 (84.31%), Postives = 89/102 (87.25%), Query Frame = 2 
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGT VGSGL S+VLFEAN LA+LSE+LS IFAEVM GK EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  AKKLHEIDPL KPKQDRYALRTS
Sbjct:  254 GLALVNGTPVGSGLASVVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTS 355
[Close]
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PAL2_PEA (Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.794e-42
Identity = 85/102 (83.33%), Postives = 90/102 (88.24%), Query Frame = 2 
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGTAVGSGL S+VLFEAN LA+LSE+LS IFAEVM GK EFTDHLTHKLKHHPGQIEAAAIMEHILDGS+YV  AKKLHE+DPL KPKQDRYALRTS
Sbjct:  263 GLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHEMDPLQKPKQDRYALRTS 364
[Close]
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PAL1_PEA (Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.794e-42
Identity = 85/102 (83.33%), Postives = 90/102 (88.24%), Query Frame = 2 
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGTAVGSGL S+VLFEAN LA+LSE+LS IFAEVM GK EFTDHLTHKLKHHPGQIEAAAIMEHILDGS+YV  AKKLHE+DPL KPKQDRYALRTS
Sbjct:  262 GLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHEMDPLQKPKQDRYALRTS 363
[Close]
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PAL1_PHAVU (Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.822e-41
Identity = 84/102 (82.35%), Postives = 90/102 (88.24%), Query Frame = 2 
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGTAVGSG+ S+VLF+AN LA+LSE+LS IFAEVM GK EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY+  AKKLHEIDPL KPKQDRYALRTS
Sbjct:   45 GLALVNGTAVGSGMASIVLFDANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEIDPLQKPKQDRYALRTS 146
[Close]
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.379e-41
Identity = 82/102 (80.39%), Postives = 90/102 (88.24%), Query Frame = 2 
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGTAVGSG+ SMVLF+AN LA+LSE++S IFAEVM GK EFTDHLTHKLKHHPGQIEAAAIMEHIL+GSSYV  AKK+HE+DPL KPKQDRYALRTS
Sbjct:  249 GLALVNGTAVGSGMASMVLFDANTLAVLSEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILEGSSYVKEAKKVHEMDPLQKPKQDRYALRTS 350
The following BLAST results are available for this feature:
BLAST of CX293484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PAL1_SOYBN7.396e-4385.29Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PA... [more]
PALY_MEDSA9.659e-4385.29Phenylalanine ammonia-lyase OS=Medicago sativa PE=... [more]
PALY_CAMSI2.152e-4284.31Phenylalanine ammonia-lyase OS=Camellia sinensis G... [more]
PAL2_PHAVU2.152e-4283.33Phenylalanine ammonia-lyase class 2 OS=Phaseolus v... [more]
PAL4_POPKI2.810e-4283.33Phenylalanine ammonia-lyase G4 (Fragment) OS=Popul... [more]
PALY_STYHU3.670e-4284.31Phenylalanine ammonia-lyase OS=Stylosanthes humili... [more]
PAL2_PEA4.794e-4283.33Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=... [more]
PAL1_PEA4.794e-4283.33Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=... [more]
PAL1_PHAVU1.822e-4182.35Phenylalanine ammonia-lyase class 1 (Fragment) OS=... [more]
PAL1_RUBID2.379e-4180.39Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC04032C06SK FlavFr1 Citrus clementina cDNA clone C04032C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293484 ID=CX293484; Name=CX293484; organism=Citrus clementina; type=EST; length=307bp
AGGGTCTTGCTCTTGTAATGGCACTGCTGTTGGTTCTGGCCTGATTTCTA
TGGTTCTGTTTGAAGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCA
GATATTTTTGCTGAAGTCATGCTAGGCAAAAGTGAGTTCACCGATCACTT
GACACACAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAA
TGGAACATATCCTCGATGGCAGCTCTTATGTTAACGTGGCTAAAAAGCTG
CATGAGATTGATCCTCTGCATAAGCCGAAACAGGATCGTTATGCCCTGAG
AACTTCA
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