CX293751

Overview
NameCX293751
Unique NameCX293751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293751 vs. ExPASy Swiss-Prot
Match: AP1G_DICDI (AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.576e-43
Identity = 80/127 (62.99%), Postives = 106/127 (83.46%), Query Frame = 1
Query:  268 TRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICS 648
            ++LRD+I+++R+CKTAAEER+ + KE A IR A+ E D + R RN+AKL++IHMLGYPT FGQMECLK I S  + +KRIGYLGLMLLLDE+QEVL+L TN ++ D+ ++NQ+IVG++LCA GNICS
Sbjct:    3 SKLRDLIKTVRSCKTAAEERSQIAKESALIRTAMKEEDLESRQRNVAKLLYIHMLGYPTQFGQMECLKLIVSPSYADKRIGYLGLMLLLDEKQEVLLLATNCIRGDIMNSNQFIVGVSLCAFGNICS 129          
BLAST of CX293751 vs. ExPASy Swiss-Prot
Match: AP1G1_PONAB (AP-1 complex subunit gamma-1 OS=Pongo abelii GN=AP1G1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.794e-41
Identity = 78/122 (63.93%), Postives = 100/122 (81.97%), Query Frame = 1
Query:  271 RLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALG 636
            RLR++IR+IR  +T AEER +++KECAAIR++  E D  YR RN+AKL+++HMLGYP HFGQ+ECLK IAS  F +KRIGYLG MLLLDERQ+V +L+TN +K DLNH+ Q++ GLALC LG
Sbjct:    6 RLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLG 127          
BLAST of CX293751 vs. ExPASy Swiss-Prot
Match: AP1G1_MOUSE (AP-1 complex subunit gamma-1 OS=Mus musculus GN=Ap1g1 PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.794e-41
Identity = 78/122 (63.93%), Postives = 100/122 (81.97%), Query Frame = 1
Query:  271 RLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALG 636
            RLR++IR+IR  +T AEER +++KECAAIR++  E D  YR RN+AKL+++HMLGYP HFGQ+ECLK IAS  F +KRIGYLG MLLLDERQ+V +L+TN +K DLNH+ Q++ GLALC LG
Sbjct:    6 RLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLG 127          
BLAST of CX293751 vs. ExPASy Swiss-Prot
Match: AP1G1_HUMAN (AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5)

HSP 1 Score: 169.088 bits (427), Expect = 1.794e-41
Identity = 78/122 (63.93%), Postives = 100/122 (81.97%), Query Frame = 1
Query:  271 RLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALG 636
            RLR++IR+IR  +T AEER +++KECAAIR++  E D  YR RN+AKL+++HMLGYP HFGQ+ECLK IAS  F +KRIGYLG MLLLDERQ+V +L+TN +K DLNH+ Q++ GLALC LG
Sbjct:    6 RLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLG 127          
BLAST of CX293751 vs. ExPASy Swiss-Prot
Match: AP1G1_USTMA (AP-1 complex subunit gamma-1 OS=Ustilago maydis GN=APL4 PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.864e-39
Identity = 73/125 (58.40%), Postives = 97/125 (77.60%), Query Frame = 1
Query:  274 LRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICS 648
            L+ +I++IR+CKT A+ER++++KE A+IR A  + D   RH N+AKL++IHMLGYP HFGQ+ECLK +A+  F +KR+GYLG+MLLLDE  EVL LVTN LK D+ H+N Y+ GLALC   NI S
Sbjct:    9 LKALIKAIRSCKTLADERSLIQKESASIRTAFKDEDPFARHNNIAKLLYIHMLGYPAHFGQIECLKLVATPRFTDKRLGYLGIMLLLDENTEVLTLVTNGLKNDMEHSNMYVCGLALCTFANIAS 133          
BLAST of CX293751 vs. ExPASy Swiss-Prot
Match: AP1G2_MOUSE (AP-1 complex subunit gamma-like 2 OS=Mus musculus GN=Ap1g2 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 74/126 (58.73%), Postives = 94/126 (74.60%), Query Frame = 1
Query:  271 RLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICS 648
            RL+D+I  IR  +T A+ER V++KECA IRA+  + D   RHR LAKL+++HMLGYP HFGQMECLK IAS  F +KR+GYLG MLLLDER +  +L+TNS+K DL+  NQ + GLALC L  + S
Sbjct:    7 RLQDLIEEIRGAETQAQEREVIQKECAQIRASFRDGDPLQRHRQLAKLLYVHMLGYPAHFGQMECLKLIASPRFTDKRVGYLGAMLLLDERHDSHLLITNSIKNDLSQGNQPVQGLALCTLSTMGS 132          
BLAST of CX293751 vs. ExPASy Swiss-Prot
Match: AP1G2_HUMAN (AP-1 complex subunit gamma-like 2 OS=Homo sapiens GN=AP1G2 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 73/126 (57.94%), Postives = 95/126 (75.40%), Query Frame = 1
Query:  271 RLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICS 648
            +L+D+I  IR  KT A+ER V++KECA IRA+  + D  +RHR LAKL+++HMLGYP HFGQMECLK IAS+ F +KR+GYLG MLLLDER +  +L+TNS+K DL+   Q + GLALC L  + S
Sbjct:    7 KLQDLIEEIRGAKTQAQEREVIQKECAHIRASFRDGDPVHRHRQLAKLLYVHMLGYPAHFGQMECLKLIASSRFTDKRVGYLGAMLLLDERHDAHLLITNSIKNDLSQGIQPVQGLALCTLSTMGS 132          
BLAST of CX293751 vs. ExPASy Swiss-Prot
Match: AP1G1_SCHPO (AP-1 complex subunit gamma-1 OS=Schizosaccharomyces pombe GN=apl4 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32
Identity = 72/140 (51.43%), Postives = 97/140 (69.29%), Query Frame = 1
Query:  229 FTTDPIMNPFSSGTRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINE--NDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNI 642
            FT  P  +P  S   L+  I+++RA KT AEE   + KE A IR  I +  ND   R +N+AKL+++ +LG PTHFGQ+ECLK ++S+ F +KR+GYL  MLLLDE QEVL L+TNSL+ DL   +++IVGLAL A GN+
Sbjct:   20 FTNSPKTHPKMSS--LKSFIKAVRASKTTAEEHTTILKESAQIRKNIRQGSNDMRMRRKNVAKLLYLFLLGEPTHFGQIECLKLLSSSRFMDKRLGYLAAMLLLDENQEVLTLLTNSLQNDLKSRDKFIVGLALSAFGNV 157          
BLAST of CX293751 vs. ExPASy Swiss-Prot
Match: AP1G1_YEAST (AP-1 complex subunit gamma-1 OS=Saccharomyces cerevisiae GN=APL4 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.090e-26
Identity = 58/130 (44.62%), Postives = 87/130 (66.92%), Query Frame = 1
Query:  265 GTRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHR--NLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICS 648
            G+ LR  I+ +R  KT A+ERA++ K+ A IR  + ++   +  R  N+ KL+++++LG  THFGQ+E +  IAS  F +KR+GYL   LLLDE +++L L+TN L  DL+H N+Y V LAL +LG + S
Sbjct:    2 GSSLRSFIKDVRGAKTLADERAIITKQSAKIRTKLRDDHLPHEKRRVNIQKLLYLYILGEKTHFGQVESINLIASDDFVDKRLGYLAATLLLDESEDLLTLLTNMLNNDLHHPNKYAVSLALTSLGFLSS 131          
BLAST of CX293751 vs. ExPASy Swiss-Prot
Match: AP2A2_DICDI (AP-2 complex subunit alpha-2 OS=Dictyostelium discoideum GN=ap2a1-1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.256e-17
Identity = 53/139 (38.13%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  244 IMNPFSSGTRLRDM---IRSIRACKTAAEERAVVRKECAAIRAAINEN---DQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNI 642
            + NP  + T +R +   I  +R   +   E   V KE A IR    EN   D   R + + KL++++MLGY   FG ME +  ++S  F EK+IGY+ L +LL+E+ E+L L+ NS K+DL   + Y   LAL A+ NI
Sbjct:    5 VTNPNIAKTSMRGLTNFISDLRNSPSKENEEKRVTKEMAHIRKEFKENKNIDGYQRRKYVCKLVYMYMLGYELDFGHMEAVTLLSSTKFSEKQIGYIALGILLNEQHEMLPLIINSFKEDLLARSDYFQSLALAAICNI 143          
The following BLAST results are available for this feature:
BLAST of CX293751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
AP1G_DICDI5.576e-4362.99AP-1 complex subunit gamma OS=Dictyostelium discoi... [more]
AP1G1_PONAB1.794e-4163.93AP-1 complex subunit gamma-1 OS=Pongo abelii GN=AP... [more]
AP1G1_MOUSE1.794e-4163.93AP-1 complex subunit gamma-1 OS=Mus musculus GN=Ap... [more]
AP1G1_HUMAN1.794e-4163.93AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP... [more]
AP1G1_USTMA2.864e-3958.40AP-1 complex subunit gamma-1 OS=Ustilago maydis GN... [more]
AP1G2_MOUSE2.681e-3758.73AP-1 complex subunit gamma-like 2 OS=Mus musculus ... [more]
AP1G2_HUMAN3.501e-3757.94AP-1 complex subunit gamma-like 2 OS=Homo sapiens ... [more]
AP1G1_SCHPO3.391e-3251.43AP-1 complex subunit gamma-1 OS=Schizosaccharomyce... [more]
AP1G1_YEAST8.090e-2644.62AP-1 complex subunit gamma-1 OS=Saccharomyces cere... [more]
AP2A2_DICDI5.256e-1738.13AP-2 complex subunit alpha-2 OS=Dictyostelium disc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04035B10SK FlavFr1 Citrus clementina cDNA clone C04035B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293751 ID=CX293751; Name=CX293751; organism=Citrus clementina; type=EST; length=648bp
ATAAGAAAAGAAAGAAAACACTTTGCACCCTCATCAGCAATCATCATCAG
ATCTCCGTTCGCAGATCTCGTCATTTAACAAATTCGGATCTCGATTTTCC
GAATTCGGACTATCCAATTTCGTCTCACTAAACTAGGAGAAGAAAATCGT
GATTGATTAGATTGATCTCGTGCGCGCGCACTTCTGATTCGGTGTGAAAT
TGGATCTGATTTGAGCTAACCCTAAAGCTTCACCACGGATCCAATCATGA
ATCCCTTCTCTTCCGGTACACGCCTAAGGGACATGATTAGGTCTATACGT
GCTTGTAAAACTGCAGCGGAAGAGCGTGCCGTTGTAAGAAAGGAGTGTGC
TGCTATTCGTGCTGCAATTAATGAGAATGATCAAGATTACAGGCACCGGA
ACCTAGCAAAACTCATGTTCATCCACATGCTTGGTTACCCCACACATTTT
GGTCAAATGGAGTGCCTAAAGTCAATTGCATCTGCTGGGTTTCCTGAGAA
GAGGATTGGTTATCTTGGCCTCATGTTGCTTCTTGATGAAAGACAAGAAG
TGCTAATGTTGGTCACAAACTCATTAAAACAAGATCTCAACCACACAAAC
CAGTATATTGTGGGACTTGCTCTTTGTGCTTTGGGAAATATTTGTTCA
back to top