CX293923

Overview
NameCX293923
Unique NameCX293923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6315 contig Ccv1_Contig6315:386..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX293923 vs. ExPASy Swiss-Prot
Match: GBF4_ARATH (G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 46/88 (52.27%), Postives = 52/88 (59.09%), Query Frame = 3 
Query:   27 MDKATQQKQRRMIKNRESAARSRERKQAYXXXXXXXXXXXXXXXXXXXXXXXXQNKQRFKQLMENLIPVVEKRRPP-RVLRRVNSLHW 287
            MDKA  Q+Q+RMIKNRESAARSRERKQAY                          K+R+K+LME LIPV EK RPP R L R +SL W
Sbjct:  183 MDKAAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKEIEESTKERYKKLMEVLIPVDEKPRPPSRPLSRSHSLEW 270
The following BLAST results are available for this feature:
BLAST of CX293923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GBF4_ARATH1.657e-1452.27G-box-binding factor 4 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionC05002E11SK FlavRip1 Citrus clementina cDNA clone C05002E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293923 ID=CX293923; Name=CX293923; organism=Citrus clementina; type=EST; length=542bp
AGAGGCGAATTGTTGAAGAGCCACCCATGGATAAGGCAACTCAGCAAAAG
CAGAGGAGAATGATCAAGAACCGAGAGTCTGCTGCAAGGTCCAGAGAGCG
AAAGCAGGCGTACACAGTTGAATTGGAGTCGCTGGTGACGCANCTGGAGG
AGGAGAAAGCACGGCTGCTGAGGGAAGAGGCTGAGCAGAACAAGCAGAGG
TTTAAGCAGCTCATGGAGAATCTTATTCCTGTTGTTGAGAAGAGAAGACC
ACCTCGTGTTCTTCGAAGAGTGAACTCATTGCACTGGTAGGTGAGGTGTG
TTATCAACCGTCAATTGTTAGCTTAGACTAAAGAAATAGTCTGGCTTTGC
AGCTTACGCAGCCTGCCATTGAGACTATATCAGATAGAATAAGATGAAGA
TGGGGGGAAATGCTCGGGATTAATTTCCCTTTGGTAGCTGATGCAGCCAG
AGACTTTAAATAATTTAATCAAAATTGAAGATGGATGTTTAAATCACTGC
TTAATGAGATCCCTGACAAAATTTGTAGTGGATTATTTTAAT
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