CX294038

Overview
NameCX294038
Unique NameCX294038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10581 contig Ccv1_Contig10581:583..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.389e-26
Identity = 55/64 (85.94%), Postives = 56/64 (87.50%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV G GDV SVSIKGS TGWQ MSRNWGQNWQSNSYL+GQSLSFQV  SDGRTVTSNNVVPA W
Sbjct:  177 NVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGW 240          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.814e-26
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAGDVHS  +KGS+TGWQAMSRNWGQNWQSNSYLNGQSLSF+VT SDG+T+ SNNV  A W
Sbjct:  175 NVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGW 238          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.040e-26
Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAGDVHSV++KGS+T WQ MSRNWGQNWQSN+ LNGQ+LSF+VTASDGRTV SNN+ PA+W
Sbjct:  178 NVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASW 241          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.277e-26
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAGDVH+VSIKGSKT  WQAMSRNWGQNWQSNSY+N QSLSFQVT SDGRT+ SN+V P+NW
Sbjct:  178 NVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNW 242          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.535e-25
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L+GQSLSFQVTASDGRTVTSNNV    W
Sbjct:  172 NVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.535e-25
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L+GQSLSFQVTASDGRTVTSNNV    W
Sbjct:  172 NVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.535e-25
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAGDVHS +IKGS+T WQAMSRNWGQNWQSNSYLNGQ+LSF+VT SDGRTV S N  PA W
Sbjct:  174 NVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGW 237          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.939e-24
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAGDVHSVS+KGS+T WQ MSRNWGQNWQSNSYLNGQSLSF VT SD R+V S NV P  W
Sbjct:  179 NVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTW 242          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.461e-23
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAGD+ +VS+KGSKT  WQ+MSRNWGQNWQSN+YL GQSLSFQVT SDGRTV S +VVP +W
Sbjct:  180 NVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDW 244          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.217e-22
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV GAGDV SVSIKG+ T WQ+MSRNWGQNWQSN+ L+GQ+LSF+VT SDGRTV SNN  P NW
Sbjct:  177 NVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNW 240          
The following BLAST results are available for this feature:
BLAST of CX294038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EXPA2_ORYSJ1.389e-2685.94Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ARATH1.814e-2681.25Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP15_ARATH4.040e-2679.69Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA8_ARATH5.277e-2683.08Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA4_ORYSJ1.535e-2582.81Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI1.535e-2582.81Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXP10_ARATH1.535e-2581.25Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA5_ARATH4.939e-2479.69Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA2_ARATH5.461e-2376.92Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXP14_ARATH1.217e-2275.00Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC05005B09SK FlavRip1 Citrus clementina cDNA clone C05005B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294038 ID=CX294038; Name=CX294038; organism=Citrus clementina; type=EST; length=530bp
CTCGTGCCGAATTCGGCACGAGGAAATGTCGGAGGAGCAGGAGATGTACA
TTCAGTATCAATCAAGGGTTCAAAGACTGGATGGCAAGCAATGTCAAGGA
ACTGGGGCCAAAATTGGCAGAGCAATTCTTATCTTAACGGCCAAAGTCTT
TCTTTCCAAGTGACAGCCAGTGACGGCAGGACTGTGACTAGCAACAATGT
TGTGCCTGCAAATTGGCAATTTGGGCAAACCTTTGAGGGTGGTCAGTTTT
AGATTTTAAGATTTTAAAAAAGTGAATCAGAAATTGTATATTTAATTGAA
TTTGGCATTGTGTTTGTGAGGGAGAAAGGGTGAGAATAGGGGTAGGTGAG
GCTGAGGCCTGGCCGATGTGGCCTGTCTTGTTGCTGTGGTGGTCTGTTGG
CACCCGCTAGGCCTCTATAAATAGAAATGATTGTGTTCTATATATAGTTA
TTACTCCAATTGAATGAACGGGTATAATTTCATTCAACGTTGTGATTTCT
GGTTATCTTTTGAGACATCAATTAAAAGTT
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