CX294065

Overview
NameCX294065
Unique NameCX294065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.718e-35
Identity = 81/186 (43.55%), Postives = 114/186 (61.29%), Query Frame = 1
Query:   25 DESYKELEILKDIDAAMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGSNXXXXXXXXXXXXXXXEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGRLP-DVGRLC 579
            DE+ KE + +  +   +I+     N     R+  +R+ FE+L +N LN+PVI +  +      +D ++ A                  E P  D  FLR  SF++LQ  R+R +KT+++SCPSCGRTLF+LQ+++  I+ +TSHLPGV IAIMGCIVNGPGEMADADFGYVG  PG++   VG+ C
Sbjct:  445 DETEKEWKEVISLKPQLIILSPSTN-----RLHYSRQFFEWLQQNQLNYPVILNFTYQG--ENEDTILLASMECGSLLCDGLGEGVWLEGP-YDILFLRQLSFSILQAARLRMSKTDFISCPSCGRTLFNLQDVTKRIQSRTSHLPGVKIAIMGCIVNGPGEMADADFGYVGSKPGKIDLYVGKEC 622          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans GN=ispG PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.078e-29
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = 1
Query:  301 QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGRL 558
            +D + +   S++LLQG R+R TKTEY+SCPSCGRTLFDLQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  PG++
Sbjct:  540 KDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFDLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKV 625          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispG PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.078e-29
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = 1
Query:  301 QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGRL 558
            +D + +   S++LLQG R+R TKTEY+SCPSCGRTLFDLQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  PG++
Sbjct:  540 KDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFDLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKV 625          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBL (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ispG PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.409e-29
Identity = 80/180 (44.44%), Postives = 105/180 (58.33%), Query Frame = 1
Query:   28 ESYKEL-EILKDIDAAMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHR-DDLVIGAGSNXXXXXXXXXXXXXXXEAPG-QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGRL 558
            ES+K L E L +I    +L  +   E     +   R+L   LS++   FP++ H  F N      D  IG G                 + P  +D + +   S++LLQG R+R TKTEY+SCPSCGRTLF+LQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  PG++
Sbjct:  456 ESFKGLPETLSEIGIKNVLFSIESKEI----LYDYRKLGSILSQHE--FPILLHGSFSNPEEALYDSAIGIGG----LLIDGIGDLIRIKTPKMKDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFNLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKV 625          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ispG PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.409e-29
Identity = 80/180 (44.44%), Postives = 105/180 (58.33%), Query Frame = 1
Query:   28 ESYKEL-EILKDIDAAMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHR-DDLVIGAGSNXXXXXXXXXXXXXXXEAPG-QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGRL 558
            ES+K L E L +I    +L  +   E     +   R+L   LS++   FP++ H  F N      D  IG G                 + P  +D + +   S++LLQG R+R TKTEY+SCPSCGRTLF+LQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  PG++
Sbjct:  456 ESFKGLPETLSEIGIKNVLFSIESKEI----LYDYRKLGSILSQHE--FPILLHGSFSNPEEALYDSAIGIGG----LLIDGIGDLIRIKTPKMKDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFNLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKV 625          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_CHLMU (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia muridarum GN=ispG PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.241e-26
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 1
Query:  304 DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGRL 558
            D    R   F++LQ   +R+T  EY+SCP CGRTLFDL E+S  I+E+T HLP G+ IA+MGCIVNGPGEMADADFGYVG  PG +
Sbjct:  480 DLKLARTLGFSILQSANIRSTTVEYISCPGCGRTLFDLPEVSQRIKERTKHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMI 565          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_AKKM8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=ispG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.539e-26
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 1
Query:  331 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGRL 558
            FN+LQ    R T+ +YVSCPSCGRTL+++QE +A IR+ T HL GV IA+MGCIVNGPGEMADADFGYVGGAP ++
Sbjct:  474 FNILQATGTRLTRADYVSCPSCGRTLYNIQEATARIRKATEHLKGVKIAVMGCIVNGPGEMADADFGYVGGAPNKI 549          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_CHLCV (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila caviae GN=ispG PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.749e-25
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 1
Query:  289 EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGRL 558
            + P      +R+ +F+ LQ   +R  KTEY+SCP CGRTLFDL E++  IREKT HL G+ IA+MGCIVNGPGEMAD+DFG+VG   G +
Sbjct:  481 DLPNVSLPTVREIAFSTLQSAGVRLVKTEYISCPGCGRTLFDLPEVTTRIREKTKHLVGLKIAVMGCIVNGPGEMADSDFGFVGSKTGMI 570          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_BACFN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ispG PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.749e-25
Identity = 66/149 (44.30%), Postives = 85/149 (57.05%), Query Frame = 1
Query:  115 RVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGSNXXXXXXXXXXXXXXXEAPGQDFDFLRD-TSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGRL 558
            RV   R L   L+   L  PVI    +      +DL I AG++                  G+    + D T+F +LQ  R+R +KTEY+SCP CGRTLF+LQ   A ++E TSHL G+ I IMGCIVNGPGEMADAD+GYVG   G++
Sbjct:  431 RVGEHRALAHQLTVEGLQNPVIFFQHYAEDT-AEDLQIKAGADMGALIFDGLCDGIYLFNQGKLSHAVIDATAFGILQAGRIRTSKTEYISCPGCGRTLFNLQSTIARVKEATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKI 578          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_BACFR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis GN=ispG PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.590e-25
Identity = 65/149 (43.62%), Postives = 85/149 (57.05%), Query Frame = 1
Query:  115 RVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGSNXXXXXXXXXXXXXXXEAPGQDFDFLRD-TSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGRL 558
            RV   R L   L+   L  PVI    +      +DL + AG++                  G+    + D T+F +LQ  R+R +KTEY+SCP CGRTLF+LQ   A ++E TSHL G+ I IMGCIVNGPGEMADAD+GYVG   G++
Sbjct:  431 RVGEHRALAHQLTVEGLQNPVIFFQHYAEDT-AEDLQVKAGADMGALIFDGLCDGIYLFNQGKLSHAVIDATAFGILQAGRIRTSKTEYISCPGCGRTLFNLQSTIARVKEATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKI 578          
The following BLAST results are available for this feature:
BLAST of CX294065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ISPG_PARUW1.718e-3543.554-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIN1.078e-2967.444-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIC1.078e-2967.444-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBL1.409e-2944.444-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBJ1.409e-2944.444-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLMU4.241e-2661.634-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_AKKM85.539e-2668.424-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLCV2.749e-2556.674-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACFN2.749e-2544.304-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACFR3.590e-2543.624-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionC05005E09SK FlavRip1 Citrus clementina cDNA clone C05005E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294065 ID=CX294065; Name=CX294065; organism=Citrus clementina; type=EST; length=616bp
GGATTGGTTGTATCATTACGCGGTGACGAATCCTACAAAGAGCTGGAAAT
CCTCAAAGATATTGACGCAGCAATGATTCTTCATGATTTACCCTTTAATG
AAGATAAAATTGGCAGAGTACAGGCAGCTAGGAGGCTATTTGAGTATCTA
TCAGAAAATAATCTAAACTTCCCTGTAATTCACCATATTCAGTTTCCGAA
TGGGATTCACAGGGATGACTTGGTCATTGGTGCCGGTTCCAATGTAGGAG
CCCTTTTAGTCGATGGACTTGGAGATGGTTTGCTGTTAGAAGCCCCAGGA
CAAGATTTTGATTTTCTGAGGGACACATCTTTCAACTTACTACAAGGTTG
CAGAATGAGGAATACAAAGACGGAGTATGTCTCATGTCCATCATGTGGTA
GAACTTTGTTTGACCTTCAAGAAATAAGTGCAGAGATACGAGAGAAAACA
TCGCACTTGCCCGGTGTTTCGATTGCTATCATGGGTTGCATTGTCAATGG
ACCTGGAGAGATGGCTGATGCAGACTTTGGGTATGTTGGTGGGGCTCCTG
GAAGATTGCCTGATGTCGGAAGACTGTGTGAGCGTGTATGCATGGACAGC
ACCATGCTTGTCACTA
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