CX294136

Overview
NameCX294136
Unique NameCX294136
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294136_ssr28 microsatellite CX294136_ssr28:28..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14798 contig Ccv1_Contig14798:1..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.140e-60
Identity = 118/134 (88.06%), Postives = 125/134 (93.28%), Query Frame = 1
Query:   79 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENAA 480
            M FKR+VEIGRVALVNYG+DYGKLVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI IDINRVP+KK LIEAMEKADVKNKWE SSWGRKLIVQKRRAALNDFDRFK+MLAKIK+ G+VRQELAKLKRE AA
Sbjct:    1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELAKLKREIAA 134          
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 4.768e-60
Identity = 117/134 (87.31%), Postives = 125/134 (93.28%), Query Frame = 1
Query:   79 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENAA 480
            M FKRYVEIGRVALVNYG+D+GKLVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI IDINRVP+KK+LIEAMEKADVKNKWE SSWGRKLIVQKRRA LNDFDRFK+MLAKIKK G+VRQELAKLK+E  A
Sbjct:    1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAKLKKEITA 134          
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.618e-55
Identity = 106/133 (79.70%), Postives = 119/133 (89.47%), Query Frame = 1
Query:   79 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENA 477
            MPFKR+VEIGRVAL+NYGKDYG+LVVIVDV+DQ RALVDAPDM RS +NFKRLSLTD+KIDI RVP+KK LI+A+E ADVKNKW  SSWGRKLIV+K RAALNDFDRFK+MLAKIK+   VRQELAKLK+  A
Sbjct:    1 MPFKRFVEIGRVALINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKIDIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133          
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL14_MOUSE (60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 3.119e-27
Identity = 61/132 (46.21%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   79 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 468
            M F+RYVE+GRVA +++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL+R
Sbjct:    1 MVFRRYVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL14_RAT (60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 60/132 (45.45%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   79 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 468
            M F+R+VE+GRVA +++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL+R
Sbjct:    1 MVFRRFVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.185e-26
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 1
Query:   79 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 468
            M F+R+VEIGRVA   YG D GKLV IVDV+DQNRALVD P   + R  MNFK L LT++K       +   + +A EK ++  KWE S   +K+  +++R  L DF+RFKLM AK  +  L++ E  KL++
Sbjct:    1 MSFRRFVEIGRVARAVYGPDQGKLVAIVDVIDQNRALVDGPCTHVARKSMNFKELELTNLKAKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLIKIEFGKLRK 132          
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.022e-26
Identity = 67/134 (50.00%), Postives = 90/134 (67.16%), Query Frame = 1
Query:   79 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEK---ADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLK 465
            M F R+VE GRVALV+YG+   KLVVIVD+LDQNR LVD+P   + R  +N KR++LT IK+D   + R   + E   K   A V   +  S WG+KL  +++RAAL+DF RFK+M+A++KK   +  ELAKLK
Sbjct:    1 MTFTRFVEAGRVALVSYGEHLNKLVVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSIKVD--DIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKKSKAINAELAKLK 132          
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL14_HUMAN (60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4)

HSP 1 Score: 117.472 bits (293), Expect = 4.504e-26
Identity = 58/132 (43.94%), Postives = 87/132 (65.91%), Query Frame = 1
Query:   79 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 468
            M F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +       +K + +A +KAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 132          
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL14_PIG (60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.310e-25
Identity = 58/132 (43.94%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   79 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 468
            M F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++++A + DFDR+K+M A+  +  L++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQK 132          
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL14_BOVIN (60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.712e-25
Identity = 58/132 (43.94%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   79 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 468
            M F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++++A + DFDR+K+M A+  +  L++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKIEVKKLQK 132          
The following BLAST results are available for this feature:
BLAST of CX294136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL141_ARATH2.140e-6088.0660S ribosomal protein L14-1 OS=Arabidopsis thalian... [more]
RL142_ARATH4.768e-6087.3160S ribosomal protein L14-2 OS=Arabidopsis thalian... [more]
RL14_PEA4.618e-5579.70Probable 60S ribosomal protein L14 OS=Pisum sativu... [more]
RL14_MOUSE3.119e-2746.2160S ribosomal protein L14 OS=Mus musculus GN=Rpl14... [more]
RL14_RAT9.075e-2745.4560S ribosomal protein L14 OS=Rattus norvegicus GN=... [more]
RL14_LUMRU1.185e-2646.9760S ribosomal protein L14 OS=Lumbricus rubellus GN... [more]
RL14_GRIJA2.022e-2650.0060S ribosomal protein L14 OS=Griffithsia japonica ... [more]
RL14_HUMAN4.504e-2643.9460S ribosomal protein L14 OS=Homo sapiens GN=RPL14... [more]
RL14_PIG1.310e-2543.9460S ribosomal protein L14 OS=Sus scrofa GN=RPL14 P... [more]
RL14_BOVIN1.712e-2543.9460S ribosomal protein L14 OS=Bos taurus GN=RPL14 P... [more]

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Properties
Property NameValue
Genbank descriptionC05011E07SK AbsAOv1 Citrus clementina cDNA clone C05011E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294136 ID=CX294136; Name=CX294136; organism=Citrus clementina; type=EST; length=556bp
GGAAACCCTAAATCGAAGCCTCTTGCCTCATTCATTCATCTCCTCGCTCC
TCCGGCAGAGCCTTGAATATCTTCGAAAATGCCGTTCAAGAGGTACGTGG
AGATAGGAAGAGTTGCTCTCGTTAATTACGGGAAGGACTATGGGAAGCTT
GTGGTCATCGTCGATGTCCTTGATCAAAACAGGGCTCTTGTTGATGCCCC
TGATATGGTGAGGAGCCAAATGAACTTCAAGAGGCTTTCTCTCACGGATA
TTAAGATTGACATCAATCGAGTTCCCAGGAAGAAGTCTTTGATTGAAGCC
ATGGAGAAGGCTGATGTGAAGAACAAATGGGAAAACAGCTCCTGGGGCAG
GAAGCTGATTGTCCAGAAAAGGAGAGCGGCACTGAATGATTTTGATAGGT
TCAAGCTCATGTTGGCCAAGATCAAGAAGGGTGGACTTGTTCGACAGGAG
CTTGCAAAACTCAAGAGGGAGAATGCAGCATAGAATTTCTCTCGTGTTCC
CCTTTCTGGTTTTAGTTCTTACGCTTCATTTGATTCTATTATGTATTGAT
TATATG
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