CX294142

Overview
NameCX294142
Unique NameCX294142
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294142 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.079e-29
Identity = 55/119 (46.22%), Postives = 71/119 (59.66%), Query Frame = 2
Query:  143 GCKHYRRRCKIRAPRCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGG--RENYFHWQRCGSC 493
            GC HY R CK++   C+E + CRHCHN+A          H L R  V+ ++C +C   QP AQ C  C   MG Y+C+ CK +DDD  K  +HCDDCGICRIG    ++YFH + CG C
Sbjct:  141 GCSHYMRNCKVQCFDCHEWYTCRHCHNDACD--------HVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTCGLC 251          
BLAST of CX294142 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.434e-26
Identity = 50/120 (41.67%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  143 GCKHYRRRCKIRAPRCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHWQRCGSCYSL 502
            GC+HY R C ++AP C++++ CR CH+          + H+L R  VK+V C  C+  Q   Q C  C    GEY+CDIC  +D D  K Q+HC++CGICRIG +E++FH  +C  C ++
Sbjct:   19 GCEHYDRGCLLKAPCCDKLYTCRLCHDNN--------EDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLAM 128          
BLAST of CX294142 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.600e-25
Identity = 49/117 (41.88%), Postives = 70/117 (59.83%), Query Frame = 2
Query:  143 GCKHYRRRCKIRAPRCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHWQRCGSC 493
            GC+HY R C ++AP C++++ CR CH+          + H+L R  VK+V C  C+  Q   Q C +C    GEY+C IC  +D D  K Q+HC+ CGICRIG +E++FH  +C  C
Sbjct:   19 GCEHYDRACLLKAPCCDKLYTCRLCHDTN--------EDHQLDRFKVKEVQCINCEKLQHAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLC 125          
The following BLAST results are available for this feature:
BLAST of CX294142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YERG_SCHPO3.079e-2946.22Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
ZN363_HUMAN5.434e-2641.67RING finger and CHY zinc finger domain-containing ... [more]
ZN363_MOUSE4.600e-2541.88RING finger and CHY zinc finger domain-containing ... [more]
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Properties
Property NameValue
Genbank descriptionC05011F03SK AbsAOv1 Citrus clementina cDNA clone C05011F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294142 ID=CX294142; Name=CX294142; organism=Citrus clementina; type=EST; length=536bp
GACAAACTAGAACCACTAACCTATCTTCCCAAGTCAGGAAAGTCTCTTTC
TTCTTCGTTTCGTTGGCTTTGCCTTGCTTGCTCTGCAGATCCCCATGGAA
GGCTCAGCTAATGAACGTATTACTTTTGGGAAGATGGGCTATGGATGCAA
GCATTATAGGAGGAGATGCAAGATTCGAGCTCCTCGTTGCAACGAGATCT
TTGATTGTCGCCATTGTCACAATGAGGCAGCGAGCATGTTAAGAAACCCT
TACGATCGGCACGAATTAGTGCGCCAAGATGTCAAACAAGTTATTTGTTC
TGTTTGTGACACCGAGCAGCCGGTTGCTCAAGTTTGTACTAACTGTGGCG
TCAATATGGGGGAATATTTCTGTGACATCTGCAAATTCTACGATGATGAT
ATTGAGAAGGGCCAGTTTCATTGTGACGATTGTGGGATCTGCAGAATCGG
AGGTCGTGAGAATTATTTTCACTGGCAGAGATGTGGGTCTTGCTATTCAC
TAGTTTGCGCAATATCATTTGTGTATAGAGAATTCA
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