CX294199

Overview
NameCX294199
Unique NameCX294199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length371
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_CITSI (30S ribosomal protein S3, chloroplastic OS=Citrus sinensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.247e-24
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2 
Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV
Sbjct:   52 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 99

HSP 2 Score: 36.965 bits (84), Expect = 6.247e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:   19 AKPKNYCEGLQEDQK 63
            AKPKNYCEGLQEDQK
Sbjct:   24 AKPKNYCEGLQEDQK 38
[Close]
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_VITVI (30S ribosomal protein S3, chloroplastic OS=Vitis vinifera GN=rps3 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.840e-20
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 2 
Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            RISSGVEGIARIEIQKRIDLIQVIIY+GFPKLL+E +PRRIEELQMNV
Sbjct:   52 RISSGVEGIARIEIQKRIDLIQVIIYMGFPKLLVEGKPRRIEELQMNV 99

HSP 2 Score: 30.4166 bits (67), Expect = 2.840e-20
Identity = 14/22 (63.64%), Postives = 17/22 (77.27%), Query Frame = 1 
Query:    4 GHYGR--AKPKNYCEGLQEDQK 63
            GH+    A+PKNY +GLQEDQK
Sbjct:   17 GHHSLWFAQPKNYSKGLQEDQK 38
[Close]
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_AETGR (30S ribosomal protein S3, chloroplastic OS=Aethionema grandiflora GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.806e-20
Identity = 42/48 (87.50%), Postives = 48/48 (100.00%), Query Frame = 2 
Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            RISSG+EGIARIEIQKRIDLIQVIIY+GFPKLL+E++PRR+EELQMNV
Sbjct:   52 RISSGMEGIARIEIQKRIDLIQVIIYMGFPKLLIEDKPRRVEELQMNV 99

HSP 2 Score: 30.4166 bits (67), Expect = 4.806e-20
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1 
Query:   19 AKPKNYCEGLQEDQK 63
            A+PK YCEGL+ED+K
Sbjct:   24 AQPKKYCEGLEEDKK 38
[Close]
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_AETCO (30S ribosomal protein S3, chloroplastic OS=Aethionema cordifolium GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.806e-20
Identity = 42/48 (87.50%), Postives = 48/48 (100.00%), Query Frame = 2 
Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            RISSG+EGIARIEIQKRIDLIQVIIY+GFPKLL+E++PRR+EELQMNV
Sbjct:   52 RISSGMEGIARIEIQKRIDLIQVIIYMGFPKLLIEDKPRRVEELQMNV 99

HSP 2 Score: 30.4166 bits (67), Expect = 4.806e-20
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1 
Query:   19 AKPKNYCEGLQEDQK 63
            A+PK YCEGL+ED+K
Sbjct:   24 AQPKKYCEGLEEDKK 38
[Close]
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_PANGI (30S ribosomal protein S3, chloroplastic OS=Panax ginseng GN=rps3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.936e-19
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 2 
Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            +ISS VEGIARIEIQKRIDLIQVIIY+GFPKLL+E+RPR IEELQMN+
Sbjct:   52 KISSSVEGIARIEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQMNL 99

HSP 2 Score: 31.9574 bits (71), Expect = 3.936e-19
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 1 
Query:    4 GHYGR--AKPKNYCEGLQEDQK 63
            GH+    A+PKNY EGLQEDQK
Sbjct:   17 GHHSLWFAQPKNYSEGLQEDQK 38
[Close]
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_HELAN (30S ribosomal protein S3, chloroplastic OS=Helianthus annuus GN=rps3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.656e-19
Identity = 39/48 (81.25%), Postives = 46/48 (95.83%), Query Frame = 2 
Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            + SSGVEGIARIEIQKRIDLIQ+IIY+GFPK+L+E+RPR IEELQMN+
Sbjct:   52 KTSSGVEGIARIEIQKRIDLIQIIIYMGFPKILIESRPRGIEELQMNL 99

HSP 2 Score: 31.9574 bits (71), Expect = 6.656e-19
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 1 
Query:    4 GHYGR--AKPKNYCEGLQEDQK 63
            GH+    A+PKNY EGLQEDQK
Sbjct:   17 GHHSLWFAQPKNYSEGLQEDQK 38
[Close]
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_OLIPU (30S ribosomal protein S3, chloroplastic OS=Olimarabidopsis pumila GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.656e-19
Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 2 
Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            RISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNV
Sbjct:   52 RISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNV 99

HSP 2 Score: 26.5646 bits (57), Expect = 8.656e-19
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1 
Query:   19 AKPKNYCEGLQEDQK 63
            A+PK Y EGL+ED+K
Sbjct:   24 AQPKKYSEGLEEDKK 38
[Close]
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_NASOF (30S ribosomal protein S3, chloroplastic OS=Nasturtium officinale GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.656e-19
Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 2 
Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            RISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNV
Sbjct:   52 RISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNV 99

HSP 2 Score: 26.5646 bits (57), Expect = 8.656e-19
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1 
Query:   19 AKPKNYCEGLQEDQK 63
            A+PK Y EGL+ED+K
Sbjct:   24 AQPKKYSEGLEEDKK 38
[Close]
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_LEPVR (30S ribosomal protein S3, chloroplastic OS=Lepidium virginicum GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.656e-19
Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 2 
Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            RISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNV
Sbjct:   52 RISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNV 99

HSP 2 Score: 26.5646 bits (57), Expect = 8.656e-19
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1 
Query:   19 AKPKNYCEGLQEDQK 63
            A+PK Y EGL+ED+K
Sbjct:   24 AQPKKYSEGLEEDKK 38
[Close]
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_CRUWA (30S ribosomal protein S3, chloroplastic OS=Crucihimalaya wallichii GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.656e-19
Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 2 
Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            RISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNV
Sbjct:   52 RISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNV 99

HSP 2 Score: 26.5646 bits (57), Expect = 8.656e-19
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1 
Query:   19 AKPKNYCEGLQEDQK 63
            A+PK Y EGL+ED+K
Sbjct:   24 AQPKKYSEGLEEDKK 38
The following BLAST results are available for this feature:
BLAST of CX294199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RR3_CITSI6.247e-24100.0030S ribosomal protein S3, chloroplastic OS=Citrus ... [more]
RR3_VITVI2.840e-2091.6730S ribosomal protein S3, chloroplastic OS=Vitis v... [more]
RR3_AETGR4.806e-2087.5030S ribosomal protein S3, chloroplastic OS=Aethion... [more]
RR3_AETCO4.806e-2087.5030S ribosomal protein S3, chloroplastic OS=Aethion... [more]
RR3_PANGI3.936e-1985.4230S ribosomal protein S3, chloroplastic OS=Panax g... [more]
RR3_HELAN6.656e-1981.2530S ribosomal protein S3, chloroplastic OS=Heliant... [more]
RR3_OLIPU8.656e-1985.4230S ribosomal protein S3, chloroplastic OS=Olimara... [more]
RR3_NASOF8.656e-1985.4230S ribosomal protein S3, chloroplastic OS=Nasturt... [more]
RR3_LEPVR8.656e-1985.4230S ribosomal protein S3, chloroplastic OS=Lepidiu... [more]
RR3_CRUWA8.656e-1985.4230S ribosomal protein S3, chloroplastic OS=Crucihi... [more]

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Properties
Property NameValue
Genbank descriptionC05013D06SK AbsAOv1 Citrus clementina cDNA clone C05013D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294199 ID=CX294199; Name=CX294199; organism=Citrus clementina; type=EST; length=371bp
TTCGGCCACTACGGCCGGGCAAAACCAAAAAACTACTGCGAGGGTCTACA
AGAAGATCAAAAAAATACGAAACTTTATTAAGAATTATATAAAAAAAAAT
AGCAGAATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTCAAAA
AAGAATTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAATTAT
TACTAGAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGTTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTGGCCCCCCCCGCCCCTT
TTTTTTTTTAATTCCAAAAATTTTTTTGGGGGGGCCCCATTTTGGGCCCT
TTTGGCCATTTCCCCCTTAGG
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