CX294200

Overview
NameCX294200
Unique NameCX294200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_CITSI (30S ribosomal protein S3, chloroplastic OS=Citrus sinensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.791e-23
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV
Sbjct:   52 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 99

HSP 2 Score: 35.4242 bits (80), Expect = 1.791e-23
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 3 
Query:    3 KPKNYCEGLQEDQK 44
            KPKNYCEGLQEDQK
Sbjct:   25 KPKNYCEGLQEDQK 38
[Close]
BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_VITVI (30S ribosomal protein S3, chloroplastic OS=Vitis vinifera GN=rps3 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.057e-19
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSGVEGIARIEIQKRIDLIQVIIY+GFPKLL+E +PRRIEELQMNV
Sbjct:   52 RISSGVEGIARIEIQKRIDLIQVIIYMGFPKLLVEGKPRRIEELQMNV 99

HSP 2 Score: 28.4906 bits (62), Expect = 1.057e-19
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:    3 KPKNYCEGLQEDQK 44
            +PKNY +GLQEDQK
Sbjct:   25 QPKNYSKGLQEDQK 38
[Close]
BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_AETGR (30S ribosomal protein S3, chloroplastic OS=Aethionema grandiflora GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.375e-19
Identity = 42/48 (87.50%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSG+EGIARIEIQKRIDLIQVIIY+GFPKLL+E++PRR+EELQMNV
Sbjct:   52 RISSGMEGIARIEIQKRIDLIQVIIYMGFPKLLIEDKPRRVEELQMNV 99

HSP 2 Score: 28.8758 bits (63), Expect = 1.375e-19
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:    3 KPKNYCEGLQEDQK 44
            +PK YCEGL+ED+K
Sbjct:   25 QPKKYCEGLEEDKK 38
[Close]
BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_AETCO (30S ribosomal protein S3, chloroplastic OS=Aethionema cordifolium GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.375e-19
Identity = 42/48 (87.50%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSG+EGIARIEIQKRIDLIQVIIY+GFPKLL+E++PRR+EELQMNV
Sbjct:   52 RISSGMEGIARIEIQKRIDLIQVIIYMGFPKLLIEDKPRRVEELQMNV 99

HSP 2 Score: 28.8758 bits (63), Expect = 1.375e-19
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:    3 KPKNYCEGLQEDQK 44
            +PK YCEGL+ED+K
Sbjct:   25 QPKKYCEGLEEDKK 38
[Close]
BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_PANGI (30S ribosomal protein S3, chloroplastic OS=Panax ginseng GN=rps3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.464e-18
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            +ISS VEGIARIEIQKRIDLIQVIIY+GFPKLL+E+RPR IEELQMN+
Sbjct:   52 KISSSVEGIARIEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQMNL 99

HSP 2 Score: 30.0314 bits (66), Expect = 1.464e-18
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:    3 KPKNYCEGLQEDQK 44
            +PKNY EGLQEDQK
Sbjct:   25 QPKNYSEGLQEDQK 38
[Close]
BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_OLIPU (30S ribosomal protein S3, chloroplastic OS=Olimarabidopsis pumila GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.476e-18
Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNV
Sbjct:   52 RISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNV 99

HSP 2 Score: 25.0238 bits (53), Expect = 2.476e-18
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3 
Query:    3 KPKNYCEGLQEDQK 44
            +PK Y EGL+ED+K
Sbjct:   25 QPKKYSEGLEEDKK 38
[Close]
BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_NASOF (30S ribosomal protein S3, chloroplastic OS=Nasturtium officinale GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.476e-18
Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNV
Sbjct:   52 RISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNV 99

HSP 2 Score: 25.0238 bits (53), Expect = 2.476e-18
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3 
Query:    3 KPKNYCEGLQEDQK 44
            +PK Y EGL+ED+K
Sbjct:   25 QPKKYSEGLEEDKK 38
[Close]
BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_LEPVR (30S ribosomal protein S3, chloroplastic OS=Lepidium virginicum GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.476e-18
Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNV
Sbjct:   52 RISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNV 99

HSP 2 Score: 25.0238 bits (53), Expect = 2.476e-18
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3 
Query:    3 KPKNYCEGLQEDQK 44
            +PK Y EGL+ED+K
Sbjct:   25 QPKKYSEGLEEDKK 38
[Close]
BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_CRUWA (30S ribosomal protein S3, chloroplastic OS=Crucihimalaya wallichii GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.476e-18
Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNV
Sbjct:   52 RISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNV 99

HSP 2 Score: 25.0238 bits (53), Expect = 2.476e-18
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3 
Query:    3 KPKNYCEGLQEDQK 44
            +PK Y EGL+ED+K
Sbjct:   25 QPKKYSEGLEEDKK 38
[Close]
BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_CAPBU (30S ribosomal protein S3, chloroplastic OS=Capsella bursa-pastoris GN=rps3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.476e-18
Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNV
Sbjct:   52 RISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNV 99

HSP 2 Score: 25.0238 bits (53), Expect = 2.476e-18
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3 
Query:    3 KPKNYCEGLQEDQK 44
            +PK Y EGL+ED+K
Sbjct:   25 QPKKYSEGLEEDKK 38
The following BLAST results are available for this feature:
BLAST of CX294200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RR3_CITSI1.791e-23100.0030S ribosomal protein S3, chloroplastic OS=Citrus ... [more]
RR3_VITVI1.057e-1991.6730S ribosomal protein S3, chloroplastic OS=Vitis v... [more]
RR3_AETGR1.375e-1987.5030S ribosomal protein S3, chloroplastic OS=Aethion... [more]
RR3_AETCO1.375e-1987.5030S ribosomal protein S3, chloroplastic OS=Aethion... [more]
RR3_PANGI1.464e-1885.4230S ribosomal protein S3, chloroplastic OS=Panax g... [more]
RR3_OLIPU2.476e-1885.4230S ribosomal protein S3, chloroplastic OS=Olimara... [more]
RR3_NASOF2.476e-1885.4230S ribosomal protein S3, chloroplastic OS=Nasturt... [more]
RR3_LEPVR2.476e-1885.4230S ribosomal protein S3, chloroplastic OS=Lepidiu... [more]
RR3_CRUWA2.476e-1885.4230S ribosomal protein S3, chloroplastic OS=Crucihi... [more]
RR3_CAPBU2.476e-1885.4230S ribosomal protein S3, chloroplastic OS=Capsell... [more]

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Properties
Property NameValue
Genbank descriptionC05013D07SK AbsAOv1 Citrus clementina cDNA clone C05013D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294200 ID=CX294200; Name=CX294200; organism=Citrus clementina; type=EST; length=527bp
CAAAACCAAAAAACTATTGCGAGGGTCTACAAGAAGATCAAAAAAATACG
AAACTTTATTAAGAATTATATAAAAAAAAATAGCAGAATATCTTCCGGTG
TTGAGGGAATTGCACGGATAGAGATTCAAAAAAGAATTGATCTAATTCAA
GTTATAATCTATATAGGGTTCCCAAAATTATTACTAGAAAATAGACCGCG
AAGAATTGAAGAATTACAGATGAATGTATAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAATTTTTCGCCCCCCCCCCGCCTTGTCATTTTTAATTTGGGAA
CTTTTTTGACTGGCGCCCCATTTAGGTTCTTTTTGGCCATTTCCCCCATA
GGGGGGGTTTGAAAANCNNANCCGGTTAGCCTAATGTCGAGAAAGATGGT
GGATTGTGGTTCGGATGATGAGTTTACGTTCCAAATGCTATAAATATTGT
CTGTATGTAGTAATTGAAATCTTTACATGGAGATTCTTGAGCCTAAGTTG
TATATTTGAATTCGCTTGGAACTGGTT
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