CX294222

Overview
NameCX294222
Unique NameCX294222
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length303
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294222_ssr171 microsatellite CX294222_ssr171:171..182. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294222 vs. ExPASy Swiss-Prot
Match: MDAR_PEA (Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.839e-34
Identity = 70/94 (74.47%), Postives = 78/94 (82.98%), Query Frame = 2
Query:   20 TAAIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKKVKLKDGRTLEADIVVVGVRGRPLISLFKGQFAKNKGGTETEDFFLTTADDVYTVGD 301
            T+ IAAFYEGYYANKGI IIKGTVAVGFT N+DGEVK+VKLKDGR LEADIV+VGV GRP ISLFKGQ  +  GG +T+ FF T+  DVY VGD
Sbjct:  203 TSEIAAFYEGYYANKGINIIKGTVAVGFTANSDGEVKEVKLKDGRVLEADIVIVGVGGRPQISLFKGQVEEQHGGIKTDSFFKTSVPDVYAVGD 296          
BLAST of CX294222 vs. ExPASy Swiss-Prot
Match: MDAR4_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.137e-33
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 2
Query:   20 TAAIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKKVKLKDGRTLEADIVVVGVRGRPLISLFKGQFAKNKGGTETEDFFLTTADDVYTVGD 301
            TA IA+FYEGYYANKGI I+KGTVA GFTTN++GEV +VKLKDGRTLEADIV+VGV GRP+ISLFK Q  + KGG +T+ FF T+  DVY +GD
Sbjct:  205 TAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKDGRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGD 298          
BLAST of CX294222 vs. ExPASy Swiss-Prot
Match: MDARS_CUCSA (Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.033e-32
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 2
Query:   20 TAAIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKKVKLKDGRTLEADIVVVGVRGRPLISLFKGQFAKNKGGTETEDFFLTTADDVYTVGD 301
            T  IAAFYEGYYA KGI IIKGTVAVGFT + +GEVK+VKLKDGR LEADIVVVGV  RPL SLFKGQ  + KGG +T++FF T+  DVY VGD
Sbjct:  204 TPEIAAFYEGYYAQKGITIIKGTVAVGFTVDTNGEVKEVKLKDGRVLEADIVVVGVGARPLTSLFKGQIVEEKGGIKTDEFFKTSVPDVYAVGD 297          
BLAST of CX294222 vs. ExPASy Swiss-Prot
Match: MDAR_SOLLC (Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.248e-31
Identity = 66/94 (70.21%), Postives = 75/94 (79.79%), Query Frame = 2
Query:   20 TAAIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKKVKLKDGRTLEADIVVVGVRGRPLISLFKGQFAKNKGGTETEDFFLTTADDVYTVGD 301
            T  IAAFYEGYY NKG+ IIKGTVAVGF T+ +GEVK+VKLKDGR LEADIVVVGV  RPL +LFKGQ  + KGG +T+ FF T+  DVY VGD
Sbjct:  204 TEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGEVKEVKLKDGRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGD 297          
BLAST of CX294222 vs. ExPASy Swiss-Prot
Match: MDAR1_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.936e-31
Identity = 65/94 (69.15%), Postives = 76/94 (80.85%), Query Frame = 2
Query:   20 TAAIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKKVKLKDGRTLEADIVVVGVRGRPLISLFKGQFAKNKGGTETEDFFLTTADDVYTVGD 301
            TA IA+FYE YYANKGIKIIKGTVA GF+TN+DGEV +VKL+DGRTLEA+IVV GV  RP  SLFKGQ  + KGG +T+ FF T+  DVY +GD
Sbjct:  206 TAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLEDGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGD 299          
BLAST of CX294222 vs. ExPASy Swiss-Prot
Match: MDAR3_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.540e-31
Identity = 65/94 (69.15%), Postives = 76/94 (80.85%), Query Frame = 2
Query:   20 TAAIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKKVKLKDGRTLEADIVVVGVRGRPLISLFKGQFAKNKGGTETEDFFLTTADDVYTVGD 301
            TA IAAFYE YY NKG+KIIKGTVA GFT   +GEVK+V+LKDGRTLEADIV+VGV  +PL SLFKGQ  ++KGG +T+ FF T+  DVY VGD
Sbjct:  204 TADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGD 297          
BLAST of CX294222 vs. ExPASy Swiss-Prot
Match: MDAR2_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.550e-16
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 2
Query:   20 TAAIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKKVKLKDGRTLEADIVVVGVRGRPLISLFKGQFAKNKGGTETEDFFLTTADDVYTVGD 301
            T  IA+ YE YY  KG+K IKGTV   F  +++ +V  V LKDG  L AD+VVVG+  RP  SLF+GQ    KGG +      ++   VY +GD
Sbjct:  203 TPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLKDGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGD 296          
BLAST of CX294222 vs. ExPASy Swiss-Prot
Match: MDARP_ARATH (Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.800e-12
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 2
Query:   20 TAAIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKKVKLKDGRTLEADIVVVGVRGRPLISLFKGQFAKNK--GGTETEDFFLTTADDVYTVGD 301
            T ++A  YE  Y   G+K +KG         +DG V  VKL DG T+EAD VV+G+  +P I  F+   A NK  GG + +  F T+   ++ +GD
Sbjct:  257 TPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEADTVVIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGD 351          
The following BLAST results are available for this feature:
BLAST of CX294222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MDAR_PEA4.839e-3474.47Monodehydroascorbate reductase OS=Pisum sativum PE... [more]
MDAR4_ARATH3.137e-3371.28Probable monodehydroascorbate reductase, cytoplasm... [more]
MDARS_CUCSA2.033e-3272.34Monodehydroascorbate reductase, seedling isozyme O... [more]
MDAR_SOLLC2.248e-3170.21Monodehydroascorbate reductase OS=Solanum lycopers... [more]
MDAR1_ARATH2.936e-3169.15Probable monodehydroascorbate reductase, cytoplasm... [more]
MDAR3_ARATH6.540e-3169.15Probable monodehydroascorbate reductase, cytoplasm... [more]
MDAR2_ARATH4.550e-1645.74Probable monodehydroascorbate reductase, cytoplasm... [more]
MDARP_ARATH6.800e-1237.50Monodehydroascorbate reductase, chloroplastic OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC05013G03SK AbsAOv1 Citrus clementina cDNA clone C05013G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294222 ID=CX294222; Name=CX294222; organism=Citrus clementina; type=EST; length=303bp
TCGGCCATTACGGCCGGGCACTGCGGCTATTGCTGCTTTCTATGAGGGTT
ATTATGCCAATAAAGGAATCAAAATTATTAAGGGAACAGTTGCTGTTGGA
TTTACCACAAATGCCGATGGAGAGGTCAAAAAAGTGAAGCTGAAGGACGG
CAGGACTCTGGAAGCTGACATTGTTGTTGTTGGTGTAAGAGGAAGACCTC
TTATATCATTATTTAAAGGGCAGTTTGCAAAAAATAAAGGAGGCACTGAG
ACTGAAGATTTTTTCTTGACCACTGCTGATGATGTGTACACTGTGGGGGA
TGT
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