CX294234

Overview
NameCX294234
Unique NameCX294234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9997 contig Ccv1_Contig9997:38..578. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX294234 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.229e-27
Identity = 59/144 (40.97%), Postives = 91/144 (63.19%), Query Frame = 1 
Query:   70 MLAVFDKSVAKAPEALQSPQT--ESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANGVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKT 495
            MLAVF++S+ + P  L  PQ   +   A     +A  F +    S   +L +   +A+S   +NPL PR   V+DD+FC+F G ++N   L++ YGL++ A   +I++EAY+ LRDR PYP DQV+++++GKFAFIL+DS + T
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKAST 144
The following BLAST results are available for this feature:
BLAST of CX294234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC2.229e-2740.97Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionC05013H08SK AbsAOv1 Citrus clementina cDNA clone C05013H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294234 ID=CX294234; Name=CX294234; organism=Citrus clementina; type=EST; length=540bp
ACTGCTTGACATTTCTTTTTGTCTTTCTTTTTATCGTGGCCAGTGAAGAA
CGATCGTGAGGGAGAGAAAATGCTGGCAGTGTTTGACAAATCGGTGGCCA
AAGCCCCAGAGGCTCTGCAGAGTCCACAGACCGAGTCTGCTTGCGCGCTG
AAGAATGGTCTATTGGCTAACCACTTTAGCTCTGTTCACCCTGGCTCTGT
CACTGTGAATCTTGGCTCTTCTGGCGTCATTGCTTACTCCCTTAACAGGC
AAAATCCTCTTTTGCCAAGATTATTTGCGGTTGTGGATGACATTTTCTGC
TTGTTCCAAGGCCACATTGAGAACGTTGCTCTGCTTAAGCAGCAATATGG
ACTAAACAAAACAGCAAATGGGGTCATCATTGTCATTGAGGCTTACAGAA
CTCTCAGGGATCGAGGTCCTTATCCTGCCGATCAGGTTGTCAGAGACATT
CAAGGGAAGTTTGCATTTATTCTCTATGACAGCTCTTCGAAAACGCATTC
TTAGCTTCTGATGCTGATGGGAGTGTTCCTTCTTCTGGGT
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