CX294236

Overview
NameCX294236
Unique NameCX294236
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig554 contig Ccv1_Contig554:1..509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294236 vs. ExPASy Swiss-Prot
Match: CNOT3_HUMAN (CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.037e-36
Identity = 75/114 (65.79%), Postives = 89/114 (78.07%), Query Frame = 3
Query:  168 MGASRKLQGEIDRVLNKVQEGVDVFDSIWNKVYDTHNANQKEKFEADLKKEIKKLQRYRDHIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEG 509
            M   RKLQGEIDR L KV EGV+ F+ IW K+++  NANQKEK+EADLKKEIKKLQR RD IKTW+ S+EIKDK+        L+D RKLIE +MERFK+ E+ETKTKA+SKEG
Sbjct:    1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEG 107          
BLAST of CX294236 vs. ExPASy Swiss-Prot
Match: CNOT3_MOUSE (CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.466e-35
Identity = 74/114 (64.91%), Postives = 89/114 (78.07%), Query Frame = 3
Query:  168 MGASRKLQGEIDRVLNKVQEGVDVFDSIWNKVYDTHNANQKEKFEADLKKEIKKLQRYRDHIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEG 509
            M   RKLQGEIDR L KV EGV+ F+ IW K+++  NANQKEK+EADLKKEIKKLQR RD IKTW+ S+EIKDK+        L++ RKLIE +MERFK+ E+ETKTKA+SKEG
Sbjct:    1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDKR-------QLIENRKLIETQMERFKVVERETKTKAYSKEG 107          
BLAST of CX294236 vs. ExPASy Swiss-Prot
Match: NOT5_YEAST (General negative regulator of transcription subunit 5 OS=Saccharomyces cerevisiae GN=NOT5 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.777e-24
Identity = 57/113 (50.44%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  174 ASRKLQGEIDRVLNKVQEGVDVFDSIWNKVYDTH--NANQKEKFEADLKKEIKKLQRYRDHIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKE 506
            + RKLQ +ID++L KV+EG++ FD I+ K   T   N++ +EK E+DLK+EIKKLQ++RD IKTW+   ++KDK      +  L+  R+LIE  MERFK  EK  KTK FSKE
Sbjct:    2 SQRKLQQDIDKLLKKVKEGIEDFDDIYEKFQSTDPSNSSHREKLESDLKREIKKLQKHRDQIKTWLSKEDVKDK------QSVLMTNRRLIENGMERFKSVEKLMKTKQFSKE 108          
BLAST of CX294236 vs. ExPASy Swiss-Prot
Match: NOT3_YEAST (General negative regulator of transcription subunit 3 OS=Saccharomyces cerevisiae GN=NOT3 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 51/110 (46.36%), Postives = 76/110 (69.09%), Query Frame = 3
Query:  174 ASRKLQGEIDRVLNKVQEGVDVFDSIWNKVYD-THNANQKEKFEADLKKEIKKLQRYRDHIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFS 500
            A RKLQ E+DRV  K+ EG+++F+S + +    T+N +QK+K E+DLK+E+KKLQR R+ IK+W  S +IKDK        +L+D R+ +E  ME++K  EK +K KA+S
Sbjct:    2 AHRKLQQEVDRVFKKINEGLEIFNSYYERHESCTNNPSQKDKLESDLKREVKKLQRLREQIKSWQSSPDIKDK-------DSLLDYRRSVEIAMEKYKAVEKASKEKAYS 104          
BLAST of CX294236 vs. ExPASy Swiss-Prot
Match: NOT3_SCHPO (General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe GN=not3 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.332e-20
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = 3
Query:  225 EGVDVFDSIWNKVYDTHNANQKEKFEADLKKEIKKLQRYRDHIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEG 509
            E + +FD ++ K+  +++ +QKEK E DLK +IKKLQR RD IKTW  S++IKDKK       AL++ R+LIE +ME FK  E+E K KAFSKEG
Sbjct:    9 EKIAIFDEVYEKLSASNSVSQKEKLEGDLKTQIKKLQRLRDQIKTWASSNDIKDKK-------ALLENRRLIEAKMEEFKAVEREMKIKAFSKEG 96          
The following BLAST results are available for this feature:
BLAST of CX294236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CNOT3_HUMAN5.037e-3665.79CCR4-NOT transcription complex subunit 3 OS=Homo s... [more]
CNOT3_MOUSE1.466e-3564.91CCR4-NOT transcription complex subunit 3 OS=Mus mu... [more]
NOT5_YEAST5.777e-2450.44General negative regulator of transcription subuni... [more]
NOT3_YEAST7.807e-2146.36General negative regulator of transcription subuni... [more]
NOT3_SCHPO1.332e-2052.63General negative regulator of transcription subuni... [more]
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Properties
Property NameValue
Genbank descriptionC05013H11SK AbsAOv1 Citrus clementina cDNA clone C05013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294236 ID=CX294236; Name=CX294236; organism=Citrus clementina; type=EST; length=509bp
TTCGGCCACTACGGCCGGGGGAACCCTATGAGGACTGACTACTGACTCAA
CGACTCAAAATTCAAAACTGCATCATTTATTCAAAACCCTAAGCGCTGTT
TGCAATTTTGAATGCTGGGAATTCCCTTCCGAAATTCGGTTCTTCACTTT
TATACGATTCCATTGAAATGGGCGCCAGTCGAAAGCTTCAAGGCGAGATC
GATCGAGTGTTGAATAAAGTGCAAGAAGGCGTCGACGTCTTCGATAGCAT
CTGGAACAAGGTTTATGATACACACAATGCGAACCAGAAGGAGAAGTTTG
AGGCTGACTTGAAGAAGGAAATCAAGAAGCTGCAGAGGTACCGAGACCAT
ATCAAGACATGGATTCAGTCAAGTGAGATCAAGGACAAGAAGGTCAGTGC
CTCTTATGAGCAGGCTCTGGTGGATGCTCGGAAGCTTATTGAGCGTGAAA
TGGAAAGATTTAAGATATGTGAAAAGGAGACTAAGACTAAAGCATTTTCT
AAAGAAGGA
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