CX294237

Overview
NameCX294237
Unique NameCX294237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig554 contig Ccv1_Contig554:1..531. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294237 vs. ExPASy Swiss-Prot
Match: CNOT3_HUMAN (CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.646e-35
Identity = 76/121 (62.81%), Postives = 90/121 (74.38%), Query Frame = 2
Query:  167 MGASRKLQGEIDRVLKKVHEGVDVFNSIWNKVYDTDYANQMEKFEADLKKEIKKLQRYRDHIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTYAFSKEGLGQQPKL 529
            M   RKLQGEIDR LKKV EGV+ F  IW K+++   ANQ EK+EADLKKEIKKLQR RD IKTW+ S+EIKDK+        L+D RKLIE +MERFK+ E+ETKT A+SKEGLG   K+
Sbjct:    1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKV 114          
BLAST of CX294237 vs. ExPASy Swiss-Prot
Match: CNOT3_MOUSE (CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.061e-34
Identity = 75/121 (61.98%), Postives = 90/121 (74.38%), Query Frame = 2
Query:  167 MGASRKLQGEIDRVLKKVHEGVDVFNSIWNKVYDTDYANQMEKFEADLKKEIKKLQRYRDHIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTYAFSKEGLGQQPKL 529
            M   RKLQGEIDR LKKV EGV+ F  IW K+++   ANQ EK+EADLKKEIKKLQR RD IKTW+ S+EIKDK+        L++ RKLIE +MERFK+ E+ETKT A+SKEGLG   K+
Sbjct:    1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDKR-------QLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKV 114          
BLAST of CX294237 vs. ExPASy Swiss-Prot
Match: NOT5_YEAST (General negative regulator of transcription subunit 5 OS=Saccharomyces cerevisiae GN=NOT5 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.451e-23
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 2
Query:  173 ASRKLQGEIDRVLKKVHEGVDVFNSIWNKVYDTDYANQM--EKFEADLKKEIKKLQRYRDHIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTYAFSKEGL 511
            + RKLQ +ID++LKKV EG++ F+ I+ K   TD +N    EK E+DLK+EIKKLQ++RD IKTW+   ++KDK      +  L+  R+LIE  MERFK  EK  KT  FSKE L
Sbjct:    2 SQRKLQQDIDKLLKKVKEGIEDFDDIYEKFQSTDPSNSSHREKLESDLKREIKKLQKHRDQIKTWLSKEDVKDK------QSVLMTNRRLIENGMERFKSVEKLMKTKQFSKEAL 110          
BLAST of CX294237 vs. ExPASy Swiss-Prot
Match: NOT3_YEAST (General negative regulator of transcription subunit 3 OS=Saccharomyces cerevisiae GN=NOT3 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.380e-20
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 2
Query:  173 ASRKLQGEIDRVLKKVHEGVDVFNSIWNKVYD-TDYANQMEKFEADLKKEIKKLQRYRDHIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTYAFSKEGLGQQPKL 529
            A RKLQ E+DRV KK++EG+++FNS + +    T+  +Q +K E+DLK+E+KKLQR R+ IK+W  S +IKDK        +L+D R+ +E  ME++K  EK +K  A+S   L +   L
Sbjct:    2 AHRKLQQEVDRVFKKINEGLEIFNSYYERHESCTNNPSQKDKLESDLKREVKKLQRLREQIKSWQSSPDIKDK-------DSLLDYRRSVEIAMEKYKAVEKASKEKAYSNISLKKSETL 114          
BLAST of CX294237 vs. ExPASy Swiss-Prot
Match: NOT3_SCHPO (General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe GN=not3 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.784e-19
Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 2
Query:  224 EGVDVFNSIWNKVYDTDYANQMEKFEADLKKEIKKLQRYRDHIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTYAFSKEGLGQQPKL 529
            E + +F+ ++ K+  ++  +Q EK E DLK +IKKLQR RD IKTW  S++IKDKK       AL++ R+LIE +ME FK  E+E K  AFSKEGL    KL
Sbjct:    9 EKIAIFDEVYEKLSASNSVSQKEKLEGDLKTQIKKLQRLRDQIKTWASSNDIKDKK-------ALLENRRLIEAKMEEFKAVEREMKIKAFSKEGLSIASKL 103          
The following BLAST results are available for this feature:
BLAST of CX294237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CNOT3_HUMAN3.646e-3562.81CCR4-NOT transcription complex subunit 3 OS=Homo s... [more]
CNOT3_MOUSE1.061e-3461.98CCR4-NOT transcription complex subunit 3 OS=Mus mu... [more]
NOT5_YEAST2.451e-2350.43General negative regulator of transcription subuni... [more]
NOT3_YEAST7.380e-2043.33General negative regulator of transcription subuni... [more]
NOT3_SCHPO4.784e-1949.02General negative regulator of transcription subuni... [more]
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Properties
Property NameValue
Genbank descriptionC05013H12SK AbsAOv1 Citrus clementina cDNA clone C05013H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294237 ID=CX294237; Name=CX294237; organism=Citrus clementina; type=EST; length=530bp
TTCGGCCACTACGGCCGGGGGAACCCTATGAGGACTGACTACTGACTCAA
CGACTCAAAATCAAAACTGCGTCAATTATTCAAAACCCTAAGCGCTGTTT
GCAATTTTGAATGCTGGGAATTCCCTTCCGAAATTCGGTTCTTCACTTTT
ATACGATTCCATTGAAATGGGCGCCAGTCGAAAGCTTCAAGGCGAGATCG
ATCGAGTGTTGAAGAAAGTGCATGAAGGCGTCGACGTCTTCAATAGCATC
TGGAACAAGGTTTATGATACAGACTATGCGAACCAGATGGAGAAGTTTGA
GGCTGACTTGAAGAAGGAAATCAAGAAGCTGCAAAGGTACCGAGACCATA
TCAAGACATGGATTCAGTCAAGTGAGATCAAGGACAAGAAGGTCAGTGCC
TCTTATGAGCAGGCTCTGGTGGATGCTCGGAAGCTTATTGAGCGTGAAAT
GGAAAGATTTAAGATATGTGAAAAGGAGACTAAGACTTATGCATTTTCTA
AAGAAGGATTGGGACAACAACCCAAACTGA
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