CX294250

Overview
NameCX294250
Unique NameCX294250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11580 contig Ccv1_Contig11580:957..1505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294250 vs. ExPASy Swiss-Prot
Match: DNJH_CUCSA (DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.314e-38
Identity = 73/82 (89.02%), Postives = 80/82 (97.56%), Query Frame = 2
Query:   11 KPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 256
            KPDQFKAINDEGMPMYQRPFM+GKLYIHF+V+FP+SL+P+QCK LE VLPPRTSVQL+DMELDECEETTLHDVNIEEEMRRK
Sbjct:  308 KPDQFKAINDEGMPMYQRPFMKGKLYIHFSVEFPDSLNPEQCKALEGVLPPRTSVQLSDMELDECEETTLHDVNIEEEMRRK 389          
BLAST of CX294250 vs. ExPASy Swiss-Prot
Match: DNJH2_ALLPO (DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.416e-37
Identity = 69/82 (84.15%), Postives = 77/82 (93.90%), Query Frame = 2
Query:   11 KPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 256
            KPDQFK INDEGMPMYQRPFMRGKLYIHF+VDFP+SL+PDQCK LE+VLP R + +LTDME+DECEETT+HDVNIEEEMRRK
Sbjct:  310 KPDQFKGINDEGMPMYQRPFMRGKLYIHFSVDFPDSLTPDQCKALESVLPSRNASRLTDMEIDECEETTMHDVNIEEEMRRK 391          
BLAST of CX294250 vs. ExPASy Swiss-Prot
Match: DNJH1_ALLPO (DnaJ protein homolog 1 (Fragment) OS=Allium porrum GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.673e-36
Identity = 69/82 (84.15%), Postives = 76/82 (92.68%), Query Frame = 2
Query:   11 KPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 256
            KPDQFKAINDEGMPMYQRPFMRGKLYI F VDFP+SL+PDQCK++E+VLP   S QLTDME+DECEETT+HDVNIEEEMRRK
Sbjct:  289 KPDQFKAINDEGMPMYQRPFMRGKLYIQFLVDFPDSLTPDQCKVIESVLPRSASSQLTDMEIDECEETTMHDVNIEEEMRRK 370          
BLAST of CX294250 vs. ExPASy Swiss-Prot
Match: DNJH_ATRNU (DnaJ protein homolog ANJ1 OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.273e-33
Identity = 64/82 (78.05%), Postives = 75/82 (91.46%), Query Frame = 2
Query:   11 KPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 256
            KPDQFKAI DEGMP+YQRPFM+GK+YIHFTV+FP+SL+PDQ K LE +LPP+ S+ LT MELDECEETTLH+VNIEEEM+RK
Sbjct:  310 KPDQFKAIEDEGMPIYQRPFMKGKMYIHFTVEFPDSLNPDQVKSLEAILPPKPSMSLTYMELDECEETTLHNVNIEEEMKRK 391          
BLAST of CX294250 vs. ExPASy Swiss-Prot
Match: DNAJ3_ARATH (Chaperone protein dnaJ 3 OS=Arabidopsis thaliana GN=ATJ3 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.171e-33
Identity = 64/82 (78.05%), Postives = 75/82 (91.46%), Query Frame = 2
Query:   11 KPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 256
            KPD +KAI+DEGMP+YQRPFM+GKLYIHFTV+FP+SLSPDQ K LE VLP  ++ QL+DME+DECEETTLHDVNIE+EMRRK
Sbjct:  310 KPDSYKAISDEGMPIYQRPFMKGKLYIHFTVEFPDSLSPDQTKALEAVLPKPSTAQLSDMEIDECEETTLHDVNIEDEMRRK 391          
BLAST of CX294250 vs. ExPASy Swiss-Prot
Match: DNAJ2_ARATH (Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.135e-32
Identity = 61/82 (74.39%), Postives = 73/82 (89.02%), Query Frame = 2
Query:   11 KPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 256
            KPD +KAI+DEGMP+YQRPFM+GKLYIHFTV+FPESLSPDQ K +E VLP  T   ++DME+D+CEETTLHDVNIE+EM+RK
Sbjct:  311 KPDSYKAISDEGMPIYQRPFMKGKLYIHFTVEFPESLSPDQTKAIEAVLPKPTKAAISDMEIDDCEETTLHDVNIEDEMKRK 392          
The following BLAST results are available for this feature:
BLAST of CX294250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DNJH_CUCSA1.314e-3889.02DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 P... [more]
DNJH2_ALLPO9.416e-3784.15DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE... [more]
DNJH1_ALLPO4.673e-3684.15DnaJ protein homolog 1 (Fragment) OS=Allium porrum... [more]
DNJH_ATRNU1.273e-3378.05DnaJ protein homolog ANJ1 OS=Atriplex nummularia P... [more]
DNAJ3_ARATH2.171e-3378.05Chaperone protein dnaJ 3 OS=Arabidopsis thaliana G... [more]
DNAJ2_ARATH3.135e-3274.39Chaperone protein dnaJ 2 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionC05014B07SK AbsAOv1 Citrus clementina cDNA clone C05014B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294250 ID=CX294250; Name=CX294250; organism=Citrus clementina; type=EST; length=550bp
TACGGCCGGGAAGCCGGACCAATTCAAGGCCATAAATGATGAAGGAATGC
CTATGTATCAGAGGCCATTTATGAGGGGCAAACTGTACATTCATTTCACT
GTTGACTTCCCTGAGTCACTGAGCCCAGACCAGTGCAAGATGCTGGAGAC
CGTACTACCTCCAAGGACCTCAGTCCAGCTCACCGATATGGAACTGGATG
AGTGTGAAGAAACAACCCTGCATGATGTGAACATTGAGGAGGAAATGCGA
AGGAAGCAACAAGCAGCTCAGGAGGCATACGATGAAGATGACGATATGCA
AGGTGGTGCCCAGAGAGTGCAGTGTGCTCAGCAGTGATGATGTAGAAGAA
ATGGGGTGGCCTGATTTAGTATTTTCATTGTTTGGGAGAAAAAGATTCTC
AACATATTTATTTTCTGTTATAGGCTTTAGAGGTTCTAGTTTTGGTTTGT
CTGTCTTTATTCTTATGTTTTTCTGATAACTGACTATGTAATGGAATTCT
AGCGTTGCACCTTCAGACTCAATGCTCATATTAATATTTTTAGTGTTTAC
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