CX294261

Overview
NameCX294261
Unique NameCX294261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13421 contig Ccv1_Contig13421:1394..1986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294261 vs. ExPASy Swiss-Prot
Match: CLH_DICDI (Clathrin heavy chain OS=Dictyostelium discoideum GN=chcA PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.554e-33
Identity = 53/92 (57.61%), Postives = 71/92 (77.17%), Query Frame = 1
Query:   22 AGKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSW 297
            A K+EKHELLE RR+AAY+YKK  RW QS+ LSKKDK+YKDA+++AS S +  + EELL YF++Q     FA+CL+ CYD ++PD  +EL+W
Sbjct: 1497 AQKLEKHELLEFRRIAAYLYKKNNRWAQSVELSKKDKLYKDAIQSASDSKNPAIGEELLQYFVDQQNNSAFAACLYTCYDFLKPDAVIELAW 1588          

HSP 2 Score: 39.6614 bits (91), Expect = 2.554e-33
Identity = 14/25 (56.00%), Postives = 23/25 (92.00%), Query Frame = 2
Query:  311 IDFAFPYLLQFIREYTGKVDELVKD 385
            ++++FPYL+Q+++EYT KVD+LV D
Sbjct: 1593 LNYSFPYLIQYVKEYTTKVDQLVDD 1617          
BLAST of CX294261 vs. ExPASy Swiss-Prot
Match: CLH_RAT (Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 4.332e-33
Identity = 57/92 (61.96%), Postives = 75/92 (81.52%), Query Frame = 1
Query:   22 AGKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSW 297
            A ++EKHEL+E RR+AAY++K   RWKQS+ L KKD +YKDAM+ AS+S D ELAEELL +F+++ K+ECF +CLF CYDL+RPDV LE +W
Sbjct: 1496 AQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAW 1587          

HSP 2 Score: 31.187 bits (69), Expect = 4.332e-33
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  311 IDFAFPYLLQFIREYTGKVDEL 376
            +DFA PY +Q ++EY  KVD+L
Sbjct: 1592 MDFAMPYFIQVMKEYLTKVDKL 1613          
BLAST of CX294261 vs. ExPASy Swiss-Prot
Match: CLH_MOUSE (Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 4.332e-33
Identity = 57/92 (61.96%), Postives = 75/92 (81.52%), Query Frame = 1
Query:   22 AGKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSW 297
            A ++EKHEL+E RR+AAY++K   RWKQS+ L KKD +YKDAM+ AS+S D ELAEELL +F+++ K+ECF +CLF CYDL+RPDV LE +W
Sbjct: 1496 AQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAW 1587          

HSP 2 Score: 31.187 bits (69), Expect = 4.332e-33
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  311 IDFAFPYLLQFIREYTGKVDEL 376
            +DFA PY +Q ++EY  KVD+L
Sbjct: 1592 MDFAMPYFIQVMKEYLTKVDKL 1613          
BLAST of CX294261 vs. ExPASy Swiss-Prot
Match: CLH1_HUMAN (Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5)

HSP 1 Score: 130.954 bits (328), Expect = 4.332e-33
Identity = 57/92 (61.96%), Postives = 75/92 (81.52%), Query Frame = 1
Query:   22 AGKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSW 297
            A ++EKHEL+E RR+AAY++K   RWKQS+ L KKD +YKDAM+ AS+S D ELAEELL +F+++ K+ECF +CLF CYDL+RPDV LE +W
Sbjct: 1496 AQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAW 1587          

HSP 2 Score: 31.187 bits (69), Expect = 4.332e-33
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  311 IDFAFPYLLQFIREYTGKVDEL 376
            +DFA PY +Q ++EY  KVD+L
Sbjct: 1592 MDFAMPYFIQVMKEYLTKVDKL 1613          
BLAST of CX294261 vs. ExPASy Swiss-Prot
Match: CLH1_BOVIN (Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.332e-33
Identity = 57/92 (61.96%), Postives = 75/92 (81.52%), Query Frame = 1
Query:   22 AGKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSW 297
            A ++EKHEL+E RR+AAY++K   RWKQS+ L KKD +YKDAM+ AS+S D ELAEELL +F+++ K+ECF +CLF CYDL+RPDV LE +W
Sbjct: 1496 AQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAW 1587          

HSP 2 Score: 31.187 bits (69), Expect = 4.332e-33
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  311 IDFAFPYLLQFIREYTGKVDEL 376
            +DFA PY +Q ++EY  KVD+L
Sbjct: 1592 MDFAMPYFIQVMKEYLTKVDKL 1613          
BLAST of CX294261 vs. ExPASy Swiss-Prot
Match: CLH_DROME (Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.028e-29
Identity = 59/107 (55.14%), Postives = 80/107 (74.77%), Query Frame = 1
Query:   22 AGKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSWIEQHDRLCLPISLAV 342
            A K+EKHEL E RR+AAY+YK   RWKQS+ L KKDK+YKDAME A++S  +++AEELL +F+E+   +CFA+CL+ CYDL+RPDV LEL+W  +     +P  + V
Sbjct: 1497 AQKLEKHELTEFRRIAAYLYKGNNRWKQSVELCKKDKLYKDAMEYAAESCKQDIAEELLGWFLERDAYDCFAACLYQCYDLLRPDVILELAWKHKIVDFAMPYLIQV 1603          
BLAST of CX294261 vs. ExPASy Swiss-Prot
Match: CLH2_HUMAN (Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.120e-28
Identity = 57/107 (53.27%), Postives = 80/107 (74.77%), Query Frame = 1
Query:   22 AGKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSWIEQHDRLCLPISLAV 342
            A ++EKH+L+E R +AAY+YK    W QS+ L KKD +YKDAM+ A++S D ELA++LL +F+E+GK+ECFA+CLF CYDL+RPD+ LEL+W      L +P  + V
Sbjct: 1496 AQQLEKHQLMEFRCIAAYLYKGNNWWAQSVELCKKDHLYKDAMQHAAESRDAELAQKLLQWFLEEGKRECFAACLFTCYDLLRPDMVLELAWRHNLVDLAMPYFIQV 1602          
BLAST of CX294261 vs. ExPASy Swiss-Prot
Match: CLH_SCHPO (Probable clathrin heavy chain OS=Schizosaccharomyces pombe GN=chc1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.169e-26
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 1
Query:   22 AGKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSW 297
            A ++EKH LLE RR+AAYIY+K  RW QSI LSK+D+ YKDA+ TA  S    +AE+L+ YF+E G  ECFA+ L+ CY L+R D+ +E+SW
Sbjct: 1491 ARRLEKHSLLEFRRIAAYIYRKNKRWTQSIELSKQDRFYKDAIITARDSDQTTIAEDLMKYFVEIGNYECFAAILYTCYHLLRNDLVMEISW 1582          

HSP 2 Score: 25.0238 bits (53), Expect = 7.169e-26
Identity = 12/29 (41.38%), Postives = 16/29 (55.17%), Query Frame = 2
Query:  314 DFAFPYLLQFIREYTGKVDELVKDKIEAQ 400
            D+A+PY + F  E   KV  L KD  + Q
Sbjct: 1588 DYAYPYFINFQCEMFSKVLNLEKDLKDRQ 1616          
BLAST of CX294261 vs. ExPASy Swiss-Prot
Match: CLH_CAEEL (Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.159e-25
Identity = 54/107 (50.47%), Postives = 78/107 (72.90%), Query Frame = 1
Query:   22 AGKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSWIEQHDRLCLPISLAV 342
            A ++EKH L+E RR++AY++K   RWKQSI L KKDK+YKDAME A++S + ELAEELL +F+++   +CFA+ L+ CYDL+ PDV +EL+W  +     +P  + V
Sbjct: 1498 AQQLEKHPLVEFRRISAYLFKGNNRWKQSIELCKKDKLYKDAMEYAAESRNGELAEELLSFFLDEKLYDCFAASLYHCYDLLHPDVIMELAWKHKIMDYAMPYMIQV 1604          
BLAST of CX294261 vs. ExPASy Swiss-Prot
Match: CLH_YEAST (Clathrin heavy chain OS=Saccharomyces cerevisiae GN=CHC1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.896e-18
Identity = 36/107 (33.64%), Postives = 72/107 (67.29%), Query Frame = 1
Query:   22 AGKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKVYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELSWIEQHDRLCLPISLAV 342
            A ++E H+L+  +++ A +Y++  +W +S+++ K++K++KDA+ETA+ S D ++ E LL YF+E G +E F + L+  Y+L+R +  LE+SW+   +    P  +++
Sbjct: 1502 ASRLESHKLIFFKKIGALLYRRNKKWAKSLSILKEEKLWKDAIETAAISQDPKVVEALLTYFVETGNREGFVALLYAAYNLVRIEFVLEISWMNSLEDYIKPFEISI 1608          
The following BLAST results are available for this feature:
BLAST of CX294261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CLH_DICDI2.554e-3357.61Clathrin heavy chain OS=Dictyostelium discoideum G... [more]
CLH_RAT4.332e-3361.96Clathrin heavy chain 1 OS=Rattus norvegicus GN=Clt... [more]
CLH_MOUSE4.332e-3361.96Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=... [more]
CLH1_HUMAN4.332e-3361.96Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=... [more]
CLH1_BOVIN4.332e-3361.96Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 ... [more]
CLH_DROME5.028e-2955.14Clathrin heavy chain OS=Drosophila melanogaster GN... [more]
CLH2_HUMAN1.120e-2853.27Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 P... [more]
CLH_SCHPO7.169e-2655.43Probable clathrin heavy chain OS=Schizosaccharomyc... [more]
CLH_CAEEL1.159e-2550.47Probable clathrin heavy chain 1 OS=Caenorhabditis ... [more]
CLH_YEAST8.896e-1833.64Clathrin heavy chain OS=Saccharomyces cerevisiae G... [more]
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Properties
Property NameValue
Genbank descriptionC05014C12SK AbsAOv1 Citrus clementina cDNA clone C05014C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294261 ID=CX294261; Name=CX294261; organism=Citrus clementina; type=EST; length=594bp
CCCGGGCAATCGGCCATTACGGCCGGGAAGATTGAGAAACATGAGCTTTT
GGAAATGAGACGAGTCGCTGCATATATTTACAAAAAGGCTGGCAGATGGA
AGCAATCTATTGCACTGTCAAAGAAAGACAAGGTTTACAAAGATGCGATG
GAGACTGCCTCACAATCTGGTGATCGTGAACTTGCAGAGGAGTTGCTGGT
TTATTTCATAGAACAGGGGAAGAAGGAATGCTTTGCGTCATGCCTGTTCG
TTTGTTATGATTTGATCAGACCTGATGTTGCTCTTGAACTTTCTTGGATA
GAACAACATGATCGACTTTGCCTTCCCATATCTCTTGCAGTTTATCCGTG
AATACACAGGCAAAGTTGATGAACTTGTGAAGGACAAAATTGAAGCTCAA
ATTGAAGTCAAGTCTAAAGAGAAAGAAGAAAAGGATGTAATTGCACAACA
GAATATGTATGCTCAATTGCTGCCTCTTGCTTTGCCTGCGCCACCTATGC
CTGGTATGGGAGGTGGTTTTGCTTCACAGCACCACCTATGGGTGGAATGG
GAATGCCTCCATGCCTCCTTTCGCATGCCTCCATGGGTGCTACT
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