CX294360

Overview
NameCX294360
Unique NameCX294360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_NEUCR (40S ribosomal protein S26E OS=Neurospora crassa GN=rps-26 PE=3 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 2.889e-50
Identity = 95/119 (79.83%), Postives = 100/119 (84.03%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVRFNKDG*KINPLQSGKVA 416
            MVKKR +NGRNK GRGHVKP+RCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEY+VPKMYLKLQYCVSCAIHGKIV           APPPRVR+NKDG K+ P Q  K A
Sbjct:    1 MVKKRKNNGRNKKGRGHVKPIRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYTVPKMYLKLQYCVSCAIHGKIVRVRSREGRRNRAPPPRVRYNKDGKKVTPTQGAKTA 119          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26B_SCHPO (40S ribosomal protein S26-B OS=Schizosaccharomyces pombe GN=rps26b PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.710e-40
Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVRFNKDG*KINPLQSGK 410
            M +KR +NGRNK+GRGHVK VRC NCSR  PKDKAIKR+TIRNMVE+AAIRD+S+ASV++EY++PK+Y+KLQYCVSCAIH ++V            PPPRVR+N+DG K+NP    K
Sbjct:    1 MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_SCHCO (40S ribosomal protein S26 OS=Schizophyllum commune GN=RPS26 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.487e-38
Identity = 76/112 (67.86%), Postives = 88/112 (78.57%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVRFNKDG*KINP 395
            M KKR + GRNK+GRGHV  VRCSNCSRC  KDKAIKRFT+RNMVESAAIRDISDASV+ EY++PK+Y+K+ YCVSCAIH  +V           APPPRVR+ KDG K+NP
Sbjct:    1 MTKKRRNGGRNKSGRGHVTFVRCSNCSRCVAKDKAIKRFTVRNMVESAAIRDISDASVYPEYAIPKLYIKIAYCVSCAIHSHVVRVRSREGRRNRAPPPRVRW-KDGKKVNP 111          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26A_SCHPO (40S ribosomal protein S26-A OS=Schizosaccharomyces pombe GN=rps26a PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.327e-38
Identity = 72/119 (60.50%), Postives = 91/119 (76.47%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVRFNKDG*KINPLQSGKVA 416
            M +KR + GRNK+GRGH K VRC NCSR  PKDKAIKR+ IRNMVE+AAIRD+S+ASV++EY++PK+Y+KLQYCVSCAIH ++V            PPPRVR+N+DG ++NP    K A
Sbjct:    1 MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAKTA 119          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26B_YEAST (40S ribosomal protein S26-B OS=Saccharomyces cerevisiae GN=RPS26B PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.818e-36
Identity = 74/119 (62.18%), Postives = 88/119 (73.95%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVRFNKDG*KINPLQSGKVA 416
            M KKRASNGRNK GRGHVKPVRC NCS+  PKDKAIKR  IRN+VE+AA+RD+S+ASV+ EY++PK Y KL YCVSCAIH +IV           APP R RFN+D  K++P  + K A
Sbjct:    1 MPKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHARIVRVRSREDRKNRAPPQRPRFNRDN-KVSPAAAAKKA 118          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26A_YEAST (40S ribosomal protein S26-A OS=Saccharomyces cerevisiae GN=RPS26A PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.050e-36
Identity = 73/119 (61.34%), Postives = 88/119 (73.95%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVRFNKDG*KINPLQSGKVA 416
            M KKRASNGRNK GRGHVKPVRC NCS+  PKDKAIKR  IRN+VE+AA+RD+S+ASV+ EY++PK Y KL YCVSCAIH +IV           APP R RFN++  K++P  + K A
Sbjct:    1 MPKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHARIVRVRSREDRKNRAPPQRPRFNREN-KVSPADAAKKA 118          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_RAT (40S ribosomal protein S26 OS=Rattus norvegicus GN=Rps26 PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 8.444e-34
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVR 365
            M KKR +NGR K GRGHV+P+RC+NC+RC PKDKAIK+F IRN+VE+AA+RDIS+ASVF  Y +PK+Y+KL YCVSCAIH K+V            PPPR R
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFR 102          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_PIG (40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 PE=3 SV=4)

HSP 1 Score: 142.895 bits (359), Expect = 8.444e-34
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVR 365
            M KKR +NGR K GRGHV+P+RC+NC+RC PKDKAIK+F IRN+VE+AA+RDIS+ASVF  Y +PK+Y+KL YCVSCAIH K+V            PPPR R
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFR 102          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_MOUSE (40S ribosomal protein S26 OS=Mus musculus GN=Rps26 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 8.444e-34
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVR 365
            M KKR +NGR K GRGHV+P+RC+NC+RC PKDKAIK+F IRN+VE+AA+RDIS+ASVF  Y +PK+Y+KL YCVSCAIH K+V            PPPR R
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFR 102          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_MACFA (40S ribosomal protein S26 OS=Macaca fascicularis GN=RPS26 PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 8.444e-34
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVR 365
            M KKR +NGR K GRGHV+P+RC+NC+RC PKDKAIK+F IRN+VE+AA+RDIS+ASVF  Y +PK+Y+KL YCVSCAIH K+V            PPPR R
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFR 102          
The following BLAST results are available for this feature:
BLAST of CX294360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS26_NEUCR2.889e-5079.8340S ribosomal protein S26E OS=Neurospora crassa GN... [more]
RS26B_SCHPO2.710e-4064.1040S ribosomal protein S26-B OS=Schizosaccharomyces... [more]
RS26_SCHCO1.487e-3867.8640S ribosomal protein S26 OS=Schizophyllum commune... [more]
RS26A_SCHPO4.327e-3860.5040S ribosomal protein S26-A OS=Schizosaccharomyces... [more]
RS26B_YEAST1.818e-3662.1840S ribosomal protein S26-B OS=Saccharomyces cerev... [more]
RS26A_YEAST4.050e-3661.3440S ribosomal protein S26-A OS=Saccharomyces cerev... [more]
RS26_RAT8.444e-3462.7540S ribosomal protein S26 OS=Rattus norvegicus GN=... [more]
RS26_PIG8.444e-3462.7540S ribosomal protein S26 OS=Sus scrofa GN=RPS26 P... [more]
RS26_MOUSE8.444e-3462.7540S ribosomal protein S26 OS=Mus musculus GN=Rps26... [more]
RS26_MACFA8.444e-3462.7540S ribosomal protein S26 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionC05015F11SK FlavSen1 Citrus clementina cDNA clone C05015F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294360 ID=CX294360; Name=CX294360; organism=Citrus clementina; type=EST; length=518bp
ACTCGAGCAGTTTCAGCAGGTCACATACCCGCTGATTTTACTCGTCGCAA
GTCGCAAAGATGGTCAAGAAGAGAGCGTCCAACGGCCGCAACAAGAACGG
CAGGGGCCACGTCAAGCCTGTCCGTTGCTCCAACTGCTCGCGATGCACCC
CCAAGGACAAGGCCATCAAGAGATTCACCATCCGCAACATGGTTGAGTCC
GCCGCCATCCGTGACATCTCTGACGCCTCTGTCTTCGCTGAGTACTCTGT
CCCCAAGATGTACCTCAAGCTCCAGTACTGCGTTTCTTGCGCCATCCACG
GCAAGATCGTCCGTGTCCGTTCCCGCGAGGGCCGCCGTAACCGCGCTCCC
CCTCCTCGCGTGCGCTTCAACAAGGACGGCTAGAAGATCAACCCTCTTCA
GTCCGGCAAGGTCGCTGGCGCCCAGGCTTAAGCACGTCGCATGACCGAGA
AGATAACCTCAGACGAAGTTCGATTTTCATGCATCACGGCGAACAAGGAA
ATTATGGGGCGTCTGTCT
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