CX294561

Overview
NameCX294561
Unique NameCX294561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14437 contig Ccv1_Contig14437:24..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS2_PEA (Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 8.399e-63
Identity = 109/125 (87.20%), Postives = 117/125 (93.60%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLA 400
            VVEAMTCGLPTFAT HGGPAEIIEHG SGFHIDPYHPDQA+EL+ DFF +CKE+P+HW K+SDGGL+RIYERYTWKIYSERLMTLAGVY FWKYVSKLERRETRRYLEMFYILKFRDL  SVP+A
Sbjct:  683 VVEAMTCGLPTFATNHGGPAEIIEHGVSGFHIDPYHPDQASELLVDFFQRCKEDPNHWNKVSDGGLQRIYERYTWKIYSERLMTLAGVYSFWKYVSKLERRETRRYLEMFYILKFRDLANSVPIA 807          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS1_TULGE (Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.303e-59
Identity = 102/128 (79.69%), Postives = 116/128 (90.62%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASEN 409
            VVE+MTCGLPTFATCHGGPAEII HG SGFHIDPYH D+A+E +  FF KCKE+P+HW+KIS GGL+RIYE+YTWK+YSERLMTLAGVYGFWKYVS L+RRETRRYLEMFY LK+R+L KSVPLA +N
Sbjct:  678 VVESMTCGLPTFATCHGGPAEIIVHGVSGFHIDPYHGDKASEQLVSFFEKCKEDPAHWEKISQGGLQRIYEKYTWKLYSERLMTLAGVYGFWKYVSNLDRRETRRYLEMFYALKYRNLAKSVPLAIDN 805          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS2_ARATH (Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g49190 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.037e-57
Identity = 100/127 (78.74%), Postives = 110/127 (86.61%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASE 406
            VVE+MTC LPTFATCHGGPAEIIE+G SGFHIDPYHPDQ A  +  FF  C  NP+HW KIS+GGLKRIYERYTWK YSERL+TLAGVY FWK+VSKLERRETRRYLEMFY LKFRDL  S+PLA++
Sbjct:  677 VVESMTCALPTFATCHGGPAEIIENGVSGFHIDPYHPDQVAATLVSFFETCNTNPNHWVKISEGGLKRIYERYTWKKYSERLLTLAGVYAFWKHVSKLERRETRRYLEMFYSLKFRDLANSIPLATD 803          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUSY_BETVU (Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS1 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.273e-57
Identity = 105/129 (81.40%), Postives = 114/129 (88.37%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASENQ 412
            VVEAMTCGLPTFATCHGGPAEIIE G SGFHIDPYH DQA E M +FF KC+E+P++W KIS GGL RI ERYTW+ YSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDL  SVPLA++ +
Sbjct:  626 VVEAMTCGLPTFATCHGGPAEIIEDGVSGFHIDPYHADQA-EKMTEFFVKCREDPNYWTKISAGGLLRIKERYTWQKYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLANSVPLATDEE 753          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS2_TULGE (Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.994e-57
Identity = 99/129 (76.74%), Postives = 115/129 (89.15%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASENQ 412
            VVE+MTCGLPTFATCHGGPAEII HG SG+HIDPYH D+AAEL+ DFF K K++ +HW  IS+GGLKRIYE+YTWKIYSERL+TLAGVYGFWKYVS L+RRET+RYLEMFY LK+R+L KSVPLA + +
Sbjct:  680 VVESMTCGLPTFATCHGGPAEIIVHGVSGYHIDPYHGDKAAELLVDFFEKSKKDQTHWDAISNGGLKRIYEKYTWKIYSERLLTLAGVYGFWKYVSNLDRRETKRYLEMFYALKYRNLAKSVPLAVDGE 808          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUSY_SOLLC (Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.449e-54
Identity = 97/127 (76.38%), Postives = 112/127 (88.19%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASE 406
            VVEAMTCGLPTFAT HGGPAEII HG SGFHIDPYH +QAA+L+ADFF KCK+ PSHW+ IS GGLKRI E+YTW+IYSERL+TLA VYGFWK+VSKL+R E RRYLEMFY LK+R + ++VPLA+E
Sbjct:  679 VVEAMTCGLPTFATNHGGPAEIIVHGKSGFHIDPYHGEQAADLLADFFEKCKKEPSHWETISTGGLKRIQEKYTWQIYSERLLTLAAVYGFWKHVSKLDRLEIRRYLEMFYALKYRKMAEAVPLAAE 805          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUSY_SOYBN (Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 7.127e-54
Identity = 95/127 (74.80%), Postives = 112/127 (88.19%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASE 406
            VVEAMTCGLPTFATC+GGPAEII HG SGFHIDPYH D+AA+L+ DFF KCK +P+HW KIS  GL+RI E+YTW+IYS+RL+TL GVYGFWK+VS L+RRE+RRYLEMFY LK+R L +SVPLA+E
Sbjct:  679 VVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYHGDRAADLLVDFFEKCKLDPTHWDKISKAGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRRESRRYLEMFYALKYRKLAESVPLAAE 805          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS1_ARATH (Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1 PE=2 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 7.127e-54
Identity = 95/128 (74.22%), Postives = 111/128 (86.72%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASEN 409
            VVEAMTCGLPTFATC GGPAEII HG SGFHIDPYH DQAA+ +ADFF KCKE+PSHW +IS GGL+RI E+YTW+IYS+RL+TL GVYGFWK+VS L+R E RRYLEMFY LK+R L ++VPLA ++
Sbjct:  681 VVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEMFYALKYRPLAQAVPLAQDD 808          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS1_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.074e-53
Identity = 96/127 (75.59%), Postives = 112/127 (88.19%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASE 406
            VVEAMTCGLPTFAT HGGPAEII HG SGFHIDPYH +QAA+L+ADFF KCK++PSHW+ IS GGLKRI E+YTW+IYSE L+TLA VYGFWK+VSKL+R E RRYLEMFY LK+R + ++VPLA+E
Sbjct:  679 VVEAMTCGLPTFATNHGGPAEIIVHGKSGFHIDPYHGEQAADLLADFFEKCKKDPSHWETISMGGLKRIEEKYTWQIYSESLLTLAAVYGFWKHVSKLDRLEIRRYLEMFYALKYRKMAEAVPLAAE 805          
BLAST of CX294561 vs. ExPASy Swiss-Prot
Match: SUS1_HORVU (Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.708e-53
Identity = 94/129 (72.87%), Postives = 108/129 (83.72%), Query Frame = 2
Query:   26 VVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSVPLASENQ 412
            V+EAMTCGLPT ATCHGGPAEII  G SG HIDPYH D+AA+++ +FF K   +PS+W KIS GGLKRIYE+YTWK+YSERLMTL GVYGFWKYVS LERRETRRYLEMFY LK+R L  +VPLA + +
Sbjct:  675 VIEAMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFEKSTADPSYWDKISQGGLKRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYLEMFYALKYRSLAAAVPLAVDGE 803          
The following BLAST results are available for this feature:
BLAST of CX294561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SUS2_PEA8.399e-6387.20Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 S... [more]
SUS1_TULGE3.303e-5979.69Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1[more]
SUS2_ARATH4.037e-5778.74Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g... [more]
SUSY_BETVU5.273e-5781.40Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS... [more]
SUS2_TULGE8.994e-5776.74Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1[more]
SUSY_SOLLC2.449e-5476.38Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1[more]
SUSY_SOYBN7.127e-5474.80Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2[more]
SUS1_ARATH7.127e-5474.22Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1... [more]
SUS1_SOLTU2.074e-5375.59Sucrose synthase OS=Solanum tuberosum PE=2 SV=1[more]
SUS1_HORVU2.708e-5372.87Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05054C05SK FlavRip1 Citrus clementina cDNA clone C05054C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294561 ID=CX294561; Name=CX294561; organism=Citrus clementina; type=EST; length=658bp
CTCGTGCCGAATTCGGCACGAGGCAGTTGTGGAAGCTATGACTTGTGGAC
TTCCGACATTCGCCACTTGCCATGGTGGTCCTGCAGAGATTATCGAGCAT
GGTGCGTCAGGGTTCCATATTGATCCATATCACCCTGATCAAGCTGCTGA
ACTCATGGCAGATTTCTTTGGAAAGTGCAAGGAAAATCCAAGCCATTGGA
AAAAAATCTCTGATGGAGGGCTTAAAAGGATTTATGAAAGGTACACCTGG
AAGATTTATTCTGAAAGGCTAATGACATTGGCTGGGGTATATGGTTTCTG
GAAGTATGTTTCAAAACTTGAGAGGCGTGAGACCCGGAGGTACCTTGAGA
TGTTCTACATTCTAAAGTTCCGTGATTTGGTGAAGTCTGTTCCTTTGGCA
AGTGAGAACCAACATTAAGCTGCTGGTACTCAAGGAACTGCTAATAATTA
CCCAGCTACCTCCCGTAACTATAGTGCANAAATAAAGAGTACTTTTTGTA
TGTATATCTAATGCTTTATGTTGTATGGTTAAAAGGATATTCGAGCCTCT
CGACACTTAAATCTTCCTGTGCTATTCTCGACAGTGTTCACAATCGTGGC
TGTCGTGAAAATTTGATTGCTAAGACATTTTAATATTATTATGTTTTCTT
GGTAAAAA
back to top