CX294630

Overview
NameCX294630
Unique NameCX294630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length773
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294630_ssr694 microsatellite CX294630_ssr694:694..705. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294630 vs. ExPASy Swiss-Prot
Match: CHMU_ARATH (Chorismate mutase, chloroplastic OS=Arabidopsis thaliana GN=CM1 PE=2 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.312e-79
Identity = 142/201 (70.65%), Postives = 169/201 (84.08%), Query Frame = 3
Query:   33 TEKLHSKLGRYQSPDEHPFFPDQLPDPVLPPMQYPQVLHPIADSININIKVWNMYFRDLIPRLVEEGDDGNCGSAAVCDTMCLQILSKRIHYGKFVAEAKFLADPDAYKAAIQAQDSNKLMEILTYPTVEEAVKQRVLMKARAYGQEV---------TPHDGNGAHPVYKINPSLVADLYGDWIMPLTKEVQVAYLLRRLD 608
            TEKLH+K+GR++SPDEHPFFPD LP+P+LPP+QYP+VLH  ADSININ K+WNMYFRDL+PRLV++GDDGN GS AVCD +CLQ LSKRIHYGKFVAEAKF A P+AY++AI+AQD + LM++LT+PTVE+A+K+RV MK R YGQEV            +GN +H VYKI+P LV DLYGDWIMPLTKEVQV YLLRRLD
Sbjct:  135 TEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESH-VYKISPILVGDLYGDWIMPLTKEVQVEYLLRRLD 334          
BLAST of CX294630 vs. ExPASy Swiss-Prot
Match: CHMU_YEAST (Chorismate mutase OS=Saccharomyces cerevisiae GN=ARO7 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.269e-38
Identity = 83/193 (43.01%), Postives = 120/193 (62.18%), Query Frame = 3
Query:   36 EKLHSKLGRYQSPDEHPFFPDQLPDPVLPPMQYPQVLHPIADSININIKVWNMYFRDLIPRLVE-EGDD-GNCGSAAVCDTMCLQILSKRIHYGKFVAEAKFLADPDAYKAAIQAQDSNKLMEILTYPTVEEAVKQRVLMKARAYGQEVTPHDGNGAHPVYKINPSLVADLYGDWIMPLTKEVQVAYLLRRLD 608
            E  HS++ R++SPDE PFFPD++    LP + YPQ+L P A  +N N K+  +Y   +IP + + +GDD  N GS A  D  CLQ LS+RIH+GKFVAEAKF +D   Y   I+++D   +M+ +T   VEE + +R+  KA  YG + T   G       +I P  +  +Y + ++P+TKEV+V YLLRRL+
Sbjct:   68 EIAHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLISKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIMKNITNSAVEEKILERLTKKAEVYGVDPTNESGE-----RRITPEYLVKIYKEIVIPITKEVEVEYLLRRLE 255          
BLAST of CX294630 vs. ExPASy Swiss-Prot
Match: CHMU_SCHPO (Probable chorismate mutase OS=Schizosaccharomyces pombe GN=SPAC16E8.04c PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.052e-37
Identity = 82/193 (42.49%), Postives = 121/193 (62.69%), Query Frame = 3
Query:   30 ETEKLHSKLGRYQSPDEHPFFPDQLPDPVLPPMQYPQVLHPIADSININIKVWNMYFRDLIPRLVEEGDD-GNCGSAAVCDTMCLQILSKRIHYGKFVAEAKFLADPDAYKAAIQAQDSNKLMEILTYPTVEEAVKQRVLMKARAYGQEVTPHDGNGAHPVYKINPSLVADLYGDWIMPLTKEVQVAYLLRRL 605
            E EK+++ + RY SP+E+PF  D LP+P+LP       LHP  +++N+N ++   Y  +++P++   GDD  N GS  VCD  CLQ LS+RIHYGKFVAEAK+LA+P+ YK  I A+D   +   +     EE V +R+  KA  YG++      +   P  +IN   VA +Y D+++P+TK+V+V YLL RL
Sbjct:   65 EEEKVYALVRRYASPEEYPF-TDNLPEPILPKFSGKFPLHP--NNVNVNSEILEYYINEIVPKISSPGDDFDNYGSTVVCDIRCLQSLSRRIHYGKFVAEAKYLANPEKYKKLILARDIKGIENEIVDAAQEERVLKRLHYKALNYGRDA----ADPTKPSDRINADCVASIYKDYVIPMTKKVEVDYLLARL 250          
The following BLAST results are available for this feature:
BLAST of CX294630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CHMU_ARATH1.312e-7970.65Chorismate mutase, chloroplastic OS=Arabidopsis th... [more]
CHMU_YEAST4.269e-3843.01Chorismate mutase OS=Saccharomyces cerevisiae GN=A... [more]
CHMU_SCHPO8.052e-3742.49Probable chorismate mutase OS=Schizosaccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionC04013E01SK FlavFr1 Citrus clementina cDNA clone C04013E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294630 ID=CX294630; Name=CX294630; organism=Citrus clementina; type=EST; length=773bp
CTTNNNNNNNNNNNNNNNNNNNNNNNNNAGAAACTGAAAAACTTCACTCC
AAGTTGGGCCGATACCAAAGCCCGGATGAGCATCCATTCTTTCCTGATCA
ACTGCCTGACCCAGTGTTGCCACCTATGCAGTACCCACAGGTACTCCATC
CCATAGCTGATTCAATCAATATAAATATTAAAGTTTGGAACATGTATTTC
AGAGATCTCATCCCAAGATTAGTAGAGGAAGGAGATGATGGCAATTGTGG
ATCAGCTGCTGTTTGTGATACAATGTGCTTGCAGATTTTGTCCAAGAGAA
TACATTATGGTAAATTTGTAGCGGAAGCAAAATTTCTAGCAGATCCAGAT
GCATATAAAGCTGCCATTCAGGCACAGGACAGCAATAAGTTGATGGAAAT
TCTGACATACCCAACAGTAGAGGAGGCGGTCAAACAAAGAGTATTGATGA
AAGCCAGAGCTTATGGTCAAGAAGTTACACCCCATGATGGAAACGGAGCT
CATCCCGTTTACAAAATAAACCCAAGCTTGGTGGCAGATCTGTATGGGGA
CTGGATCATGCCATTAACAAAGGAAGTCCAAGTCGCTTACTTATTGAGAA
GGTTGGATTGAATAGGTATAGAATCTCGCTCACCCTTTTATGTTAACATA
CGTTAACAAATTTTATCTGAAACTCCAATTTGGATTTTGGTTTTGCTGCT
GCTGCTGAAGTTTGTAATTAATAAGCTTGTGACAGGCCGCCCCCACGTGC
GTTTTTATAATTGTGAAGTAGCA
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