CX294655

Overview
NameCX294655
Unique NameCX294655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1973 contig Ccv1_Contig1973:364..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294655 vs. ExPASy Swiss-Prot
Match: WNK4_ARATH (Probable serine/threonine-protein kinase WNK4 OS=Arabidopsis thaliana GN=WNK4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 2
Query:   23 YSSWDYHSGNEDDSEF----SHRAGEPLCIARATQKSTRFCPEAA--MNNDRCNSEDVNSRKACRSNSNNHRKLSRIRSLVDVRSQLLHRSLVEEIHKRRLFKTVGAVENIGFHEP 352
            YS    HSG+  +  +     + +  P  +   T   TRFCPE +  + + + N+   +S    RS ++++R L+R RSLVDV+ QLLHRS  EE  KRRLFKTVG VE +GF  P
Sbjct:  447 YSQSSSHSGSYSNLNYIAVDEYSSQSP--VMSRTHNMTRFCPEESSHLQSGQANAYAASS-STNRSLASDNRTLTRNRSLVDVQRQLLHRSPGEEARKRRLFKTVGDVETVGFQSP 559          
BLAST of CX294655 vs. ExPASy Swiss-Prot
Match: WNK8_ORYSJ (Probable serine/threonine-protein kinase WNK8 OS=Oryza sativa subsp. japonica GN=WNK8 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.134e-11
Identity = 45/119 (37.82%), Postives = 63/119 (52.94%), Query Frame = 2
Query:   50 NEDDSEFSHRAGEPLCIARATQ----KSTRFCPEAAMNNDRCNSEDVNSRKACRSNSNNHRKLSRIRSLVDVRSQLLHRSLVEEIHKRRLFKTVGAVENIGFHEPANCAAYGRCPVSRS 394
            ++DDS  S  +     I+   Q     S+R  P +A  ++         R+         R++SR RS+VD+RSQLLHR+LVEE++KR  F TVGAV +IGF +P     YG    S S
Sbjct:  485 DDDDSSTSSLSAAVSAISLQQQHCSASSSRLGPASASASEDGGGHAGRPRQREGEEERRRRRMSRNRSMVDMRSQLLHRTLVEELNKRLFFNTVGAVHDIGFRDP---TTYGSSSSSSS 600          
BLAST of CX294655 vs. ExPASy Swiss-Prot
Match: WNK7_ORYSJ (Probable serine/threonine-protein kinase WNK7 OS=Oryza sativa subsp. japonica GN=WNK7 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  119 STRFCP-EAAMNNDRCNSEDVNSRKACRSNSNNHRKLSRIRSLVDVRSQLLHRSLVEEIHKRRLFKTVGAVENIGFHEPANCAA 367
            S+R  P  A+ + D         R+         R++SR RS+VD+RSQLLHR+LVEE++KR  F TVGAV +IGF +P   A+
Sbjct:  515 SSRLGPASASASEDGGGGHAGRPRQREGEEERRRRRMSRNRSMVDMRSQLLHRTLVEELNKRLFFNTVGAVHDIGFRDPTAAAS 598          
The following BLAST results are available for this feature:
BLAST of CX294655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
WNK4_ARATH2.700e-1341.38Probable serine/threonine-protein kinase WNK4 OS=A... [more]
WNK8_ORYSJ1.134e-1137.82Probable serine/threonine-protein kinase WNK8 OS=O... [more]
WNK7_ORYSJ9.604e-1144.05Probable serine/threonine-protein kinase WNK7 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionC04030F02SK FlavFr1 Citrus clementina cDNA clone C04030F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294655 ID=CX294655; Name=CX294655; organism=Citrus clementina; type=EST; length=568bp
TGGTTCTGTTAGTTCTTTCAAGTACTCAAGCTGGGATTACCACTCAGGCA
ATGAAGATGATTCTGAGTTCAGCCACAGAGCAGGAGAGCCACTCTGCATT
GCAAGGGCAACTCAAAAATCTACAAGATTCTGCCCTGAAGCTGCTATGAA
CAATGACCGCTGCAATAGTGAAGATGTAAATTCCCGGAAAGCTTGTAGGT
CAAACAGTAATAACCACAGGAAATTATCCAGGATTCGGTCACTGGTGGAT
GTACGGAGCCAGTTGTTGCACAGGTCACTGGTGGAGGAAATCCACAAGAG
GCGACTGTTTAAGACGGTTGGTGCTGTTGAGAACATTGGGTTTCATGAGC
CAGCTAATTGTGCCGCTTACGGAAGATGCCCCGTTTCCAGATCATGACGA
AAATTTGAAGCAGATTCCACAATGATGATATTGTAAAAATTGTTTTTGCT
TTCTGGTGTGTTTAATGAATGCTTTTGTTGTGTAAAATTAAAAACTACTG
AACCTTGTGAGCTGTGAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNN
NNNNNNNATTCCCCCTAT
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