CX294717

Overview
NameCX294717
Unique NameCX294717
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 5.810e-59
Identity = 118/171 (69.01%), Postives = 134/171 (78.36%), Query Frame = 2
Query:   74 MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAASQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILETDEIKDLKPLNDRVFIKV 583
            MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRL         PKYTSIKPLGDRVLVKIK  EEKT GGI LPS AQ+KPQ GEVVAVGEG+T+GK K+DI+V  G Q+IYSKYAGTE+EFN   HLI++EDD+VGILET++IKDLKPLNDRVFIKV
Sbjct:    1 MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKV 171          

HSP 2 Score: 73.559 bits (179), Expect = 8.220e-13
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  254 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELE-FNGAXHLIVREDDVVGIL 526
            +KPL DRV +K+   EEKT GG+ L    + KP  G V+AVG G    + K+  + V  G+ V+YSKYAG + +  +G+ ++ +R  DV+ IL
Sbjct:  160 LKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAIL 252          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.906e-47
Identity = 97/174 (55.75%), Postives = 125/174 (71.84%), Query Frame = 2
Query:   74 MATAQLTASSIKVPARSLTSFDGLRPSS----VKFASVGGAASQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILETDEIKDLKPLNDRVFIKV 583
            MA   LT++S  +   +L SF+GLR +S    +  +    + + RSFR L          KYTS+KPLGDRVL+K K VEEKT  GIFLP+AAQ KPQ+GEVVA+G GK VG  KL ++VK G +V+YSKY GTE+E +G+ HLIV+EDD++GILETD++KDLKPLNDR+ IKV
Sbjct:    1 MAATHLTSTS-SLTINTLPSFEGLRSASGISKINVSVAYPSFTSRSFRGLVVRAASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKV 173          

HSP 2 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  254 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELE-FNGAXHLIVREDDVVGIL 526
            +KPL DR+L+K+  VE KT GG+ L  +++ KP  G VVA G G    +  ++ + V  G  V+YSKYAG + +  +G+ ++++R  DV+ +L
Sbjct:  162 LKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSDYMVLRVSDVMAVL 254          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 49/94 (52.13%), Postives = 72/94 (76.60%), Query Frame = 2
Query:  251 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            ++KPLGDR+++KI   EEKT+ GI LP  A+ KPQ GEVVAVG GKT+   +K++  VK G +V+YSK+AG E+E +G  +LI+R+DD++ ++E
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVEVDGEEYLIMRQDDILAVIE 95          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.349e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  254 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.349e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  254 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.349e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  254 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.679e-22
Identity = 46/95 (48.42%), Postives = 70/95 (73.68%), Query Frame = 2
Query:  254 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILETDE 538
            IKPL DRV++K +  EEKT+ G+++P  A+ KPQ G V+AVG G+     K+++SVK G +V+Y KYAGTE+  +G  +LI+RE D++GI+E ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRETDILGIIEEEK 100          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_DESVV (10 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.652e-21
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 2
Query:  251 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_DESVH (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.652e-21
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 2
Query:  251 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_DESVM (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.158e-21
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  251 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            ++KPL DRVLVK    EEKT GG+F+P  A+ KP  GEVVA G GK     KL  ++VK G  V++SKYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIKLDGVEHLVMREDDILAIIE 95          
The following BLAST results are available for this feature:
BLAST of CX294717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10C_ARATH5.810e-5969.0120 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL3.906e-4755.7520 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_NATTJ2.549e-2252.1310 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH10_THEPX4.349e-2252.1710 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH10_THEP34.349e-2252.1710 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH10_THEBR4.349e-2252.1710 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH10_RHOMR5.679e-2248.4210 kDa chaperonin OS=Rhodothermus marinus GN=groS ... [more]
CH10_DESVV1.652e-2152.1310 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH10_DESVH1.652e-2152.1310 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH10_DESVM2.158e-2153.1910 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05055B03SK FlavSen1 Citrus clementina cDNA clone C05055B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294717 ID=CX294717; Name=CX294717; organism=Citrus clementina; type=EST; length=585bp
TATCAAACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCT
CTCGCTCTCTCTGCATCTGCAAGATGGCGACAGCTCAGCTAACAGCGTCA
TCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACC
GTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAACGCTCTT
TCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACT
TCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGA
GGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCAGCTCAAACAAAGC
CTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAG
GCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAA
GTATGCAGGGACTGAGTTGGAGTTCAACGGCGCANATCATCTCATAGTGA
GGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTT
AAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGC
back to top