CX294729
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 5.963e-51 Identity = 101/153 (66.01%), Postives = 110/153 (71.90%), Query Frame = 2 Query: 155 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA----------XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRD 583 MSSR+SRT+YVGNLPGDIREREVEDLF KYGP+ IDLK+PPRPPGYAFVEF++ARDAEDAI GRDGYDFDGHRLRVELA E+RVLVTGLPSSASWQDLKDHMR+ GDVCFS V+RD Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRD 153
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 4.149e-36 Identity = 77/140 (55.00%), Postives = 91/140 (65.00%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589 +YVGNLP DIR ++VED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG+ Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGT 156
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3) HSP 1 Score: 150.599 bits (379), Expect = 5.419e-36 Identity = 76/140 (54.29%), Postives = 91/140 (65.00%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGT 157
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3) HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34 Identity = 74/140 (52.86%), Postives = 90/140 (64.29%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT 157
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3) HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34 Identity = 74/140 (52.86%), Postives = 90/140 (64.29%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT 157
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3) HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34 Identity = 74/140 (52.86%), Postives = 90/140 (64.29%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT 157
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2) HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34 Identity = 74/140 (52.86%), Postives = 90/140 (64.29%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT 157
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34 Identity = 74/140 (52.86%), Postives = 90/140 (64.29%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT 157
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2) HSP 1 Score: 144.821 bits (364), Expect = 2.973e-34 Identity = 76/150 (50.67%), Postives = 90/150 (60.00%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL-------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589 +YVGNLP DIR ++VED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ RDGYD+DG+RLRVE EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG+ Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGT 166
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.130e-33 Identity = 76/159 (47.80%), Postives = 91/159 (57.23%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL----------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGT 176 The following BLAST results are available for this feature:
BLAST of CX294729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294729 ID=CX294729; Name=CX294729; organism=Citrus clementina; type=EST; length=590bpback to top |