CX294729

Overview
NameCX294729
Unique NameCX294729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig572 contig Ccv1_Contig572:1..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.963e-51
Identity = 101/153 (66.01%), Postives = 110/153 (71.90%), Query Frame = 2
Query:  155 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA----------XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRD 583
            MSSR+SRT+YVGNLPGDIREREVEDLF KYGP+  IDLK+PPRPPGYAFVEF++ARDAEDAI GRDGYDFDGHRLRVELA                                     E+RVLVTGLPSSASWQDLKDHMR+ GDVCFS V+RD
Sbjct:    1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRD 153          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.149e-36
Identity = 77/140 (55.00%), Postives = 91/140 (65.00%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589
            +YVGNLP DIR ++VED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG+
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGT 156          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 5.419e-36
Identity = 76/140 (54.29%), Postives = 91/140 (65.00%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGT 157          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34
Identity = 74/140 (52.86%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT 157          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34
Identity = 74/140 (52.86%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT 157          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34
Identity = 74/140 (52.86%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT 157          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34
Identity = 74/140 (52.86%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT 157          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34
Identity = 74/140 (52.86%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT 157          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.973e-34
Identity = 76/150 (50.67%), Postives = 90/150 (60.00%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL-------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589
            +YVGNLP DIR ++VED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+  RDGYD+DG+RLRVE                                          EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG+
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGT 166          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.130e-33
Identity = 76/159 (47.80%), Postives = 91/159 (57.23%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL----------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                                   EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGT 176          
The following BLAST results are available for this feature:
BLAST of CX294729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SFRS1_ARATH5.963e-5166.01Pre-mRNA-splicing factor SF2 OS=Arabidopsis thalia... [more]
SFR1B_DANRE4.149e-3655.00Splicing factor, arginine/serine-rich 1B OS=Danio ... [more]
SFRS1_CHICK5.419e-3654.29Splicing factor, arginine/serine-rich 1 OS=Gallus ... [more]
SFRS1_PONAB1.743e-3452.86Splicing factor, arginine/serine-rich 1 OS=Pongo a... [more]
SFRS1_PIG1.743e-3452.86Splicing factor, arginine/serine-rich 1 OS=Sus scr... [more]
SFRS1_MOUSE1.743e-3452.86Splicing factor, arginine/serine-rich 1 OS=Mus mus... [more]
SFRS1_HUMAN1.743e-3452.86Splicing factor, arginine/serine-rich 1 OS=Homo sa... [more]
SFRS1_BOVIN1.743e-3452.86Splicing factor, arginine/serine-rich 1 OS=Bos tau... [more]
SFR1A_DANRE2.973e-3450.67Splicing factor, arginine/serine-rich 1A OS=Danio ... [more]
SFRS1_XENTR1.130e-3347.80Splicing factor, arginine/serine-rich 1 OS=Xenopus... [more]

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Properties
Property NameValue
Genbank descriptionC05055C05SK FlavSen1 Citrus clementina cDNA clone C05055C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294729 ID=CX294729; Name=CX294729; organism=Citrus clementina; type=EST; length=590bp
GAGCGTAGGACTCAATATCGTACACCGGGTAGCACATAATCCCTCTACGG
CCTTCAATAAATATCCATCCTTCCCTCGCCCAATTTCAAACCCTAATCTT
CGAAGCTCTTAGTCTTTGTGCACAACTATCGTTTAATCATCATTACAGGA
AAAAATGAGCAGCCGTGCAAGCAGAACTCTCTATGTTGGGAACCTGCCTG
GTGATATTCGGGAGAGAGAAGTGGAAGATCTGTTTTACAAGTATGGACCT
ATAGCCCACATTGACCTGAAGATCCCGCCAAGGCCTCCTGGTTATGCATT
TGTTGAGTTTGAAGAGGCTCGTGATGCTGAGGATGCAATTCGTGGTCGCG
ATGGCTATGATTTTGATGGGCATCGGTTACGGGTGGAACTTGCGCATGGT
GGGCGGGGCCGTTCATCATCTGATCGTCATAGTAGTCACAGCAGTGGCCG
AGGACGTGGAGTATCCAGGCGATCCGAATATCGTGTGTTAGTCACTGGAT
TACCCTCTTCTGCTTCATGGCAAGACCTTAAGGATCACATGCGTCGAGCA
GGAGATGTTTGTTTCTCACATGTTTTTCGCGATGGCAGTG
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