CX294778

Overview
NameCX294778
Unique NameCX294778
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13125 contig Ccv1_Contig13125:636..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294778 vs. ExPASy Swiss-Prot
Match: WDR44_BOVIN (WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.595e-19
Identity = 51/155 (32.90%), Postives = 95/155 (61.29%), Query Frame = 3
Query:    6 YFISGSIDGKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQKQI-CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 458
            YF+SGS+DGK+R+W +   +V  + ++    ++++A  +C +GK  ++GT  G C FYD +  + + Q  +   +G+ K+ G++ITG +  P + +K++VTS DS +R+    ++    K   +  + SQ+ A+F+ D  ++VS SED  +YIW+
Sbjct:  661 YFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKV-GRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFNYLVSGSEDKYVYIWS 813          
BLAST of CX294778 vs. ExPASy Swiss-Prot
Match: WDR44_RAT (WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.083e-19
Identity = 51/155 (32.90%), Postives = 95/155 (61.29%), Query Frame = 3
Query:    6 YFISGSIDGKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQKQI-CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 458
            YF+SGS+DGK+R+W +   +V  + ++    ++++A  +C +GK  ++GT  G C FYD +  + + Q  +   +G+ K+ G++ITG +  P + +K++VTS DS +R+    ++    K   +  + SQ+ A+F+ D  ++VS SED  +YIW+
Sbjct:  657 YFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKV-GRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWS 809          
BLAST of CX294778 vs. ExPASy Swiss-Prot
Match: WDR44_MOUSE (WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.083e-19
Identity = 51/155 (32.90%), Postives = 95/155 (61.29%), Query Frame = 3
Query:    6 YFISGSIDGKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQKQI-CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 458
            YF+SGS+DGK+R+W +   +V  + ++    ++++A  +C +GK  ++GT  G C FYD +  + + Q  +   +G+ K+ G++ITG +  P + +K++VTS DS +R+    ++    K   +  + SQ+ A+F+ D  ++VS SED  +YIW+
Sbjct:  664 YFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKV-GRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWS 816          
BLAST of CX294778 vs. ExPASy Swiss-Prot
Match: WDR44_HUMAN (WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.083e-19
Identity = 51/155 (32.90%), Postives = 95/155 (61.29%), Query Frame = 3
Query:    6 YFISGSIDGKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQKQI-CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 458
            YF+SGS+DGK+R+W +   +V  + ++    ++++A  +C +GK  ++GT  G C FYD +  + + Q  +   +G+ K+ G++ITG +  P + +K++VTS DS +R+    ++    K   +  + SQ+ A+F+ D  ++VS SED  +YIW+
Sbjct:  662 YFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKV-GRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWS 814          
BLAST of CX294778 vs. ExPASy Swiss-Prot
Match: WDR44_XENLA (WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.553e-19
Identity = 50/154 (32.47%), Postives = 90/154 (58.44%), Query Frame = 3
Query:    6 YFISGSIDGKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQKQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 458
            YF+SGS+DGK+R+W +   +V  + +I    ++++A  +C +GK  ++GT  G C FYD +  + + Q  +     +   G++ITG +  P + +K++VTS DS +R+    ++    K      + SQ+ A+F+ D  ++VS SED  +YIW+
Sbjct:  665 YFLSGSLDGKLRLWNIPDKKVALWNEIDGQTKLITAANFCQNGKHAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNRVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGCVNSSSQIKASFSHDFTYIVSGSEDKYVYIWS 817          
BLAST of CX294778 vs. ExPASy Swiss-Prot
Match: YF48_SCHPO (Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe GN=SPAC3H5.08c PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.929e-18
Identity = 53/159 (33.33%), Postives = 88/159 (55.35%), Query Frame = 3
Query:    6 YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQKQICLQGKKKLPGKRITGFQF------SPSDPSKVIVTSADSLVRV--LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 458
            +F+SGS+D K+R+W ++   V  + ++ E+++AV + PDG   I GT  G C FYD +  +   Q  I     K   G ++TG Q       + +  ++++VT+ DS +R+  L  +++  KFK  A   A SQ  A F  DG +V+  SED  ++IW+
Sbjct:  364 FFLSGSLDCKLRLWSIKEKAVSFWNELPELITAVAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIRSSRGKNAKGSKVTGIQTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSLELKFKGHA--NAQSQNRAYFDDDGNYVICGSEDHQVFIWD 520          
BLAST of CX294778 vs. ExPASy Swiss-Prot
Match: YNS5_SCHPO (Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe GN=SPBC18H10.05 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.495e-14
Identity = 40/157 (25.48%), Postives = 82/157 (52.23%), Query Frame = 3
Query:    6 YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQKQICLQGKKKLPGKRITGFQFS---PSDPSK---VIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 458
            YF+SGS+D K+++W + R +++ +T++  +VS +C+ PDG+  +VG   G C  Y+ K+ Q Y    +      +    R+TG Q +   P+D      V+V++ D+ +R+          K S       ++ +  + D  +++S S+ + + +W+
Sbjct:  310 YFVSGSLDCKIQLWSILRHKILHWTELEYVVSTICFYPDGESIVVGMFYGLCAIYETKNLQ-YVSSWLIHHSPSRNKKCRVTGLQCASIIPNDSKSDNVVLVSTNDNAIRLYNTVTHALVLKLSDAHRVNGRVLSRLSEDNSYIISGSDTNEVVLWH 465          
The following BLAST results are available for this feature:
BLAST of CX294778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
WDR44_BOVIN1.595e-1932.90WD repeat-containing protein 44 OS=Bos taurus GN=W... [more]
WDR44_RAT2.083e-1932.90WD repeat-containing protein 44 OS=Rattus norvegic... [more]
WDR44_MOUSE2.083e-1932.90WD repeat-containing protein 44 OS=Mus musculus GN... [more]
WDR44_HUMAN2.083e-1932.90WD repeat-containing protein 44 OS=Homo sapiens GN... [more]
WDR44_XENLA3.553e-1932.47WD repeat-containing protein 44 OS=Xenopus laevis ... [more]
YF48_SCHPO3.929e-1833.33Uncharacterized WD repeat-containing protein C3H5.... [more]
YNS5_SCHPO4.495e-1425.48Uncharacterized WD repeat-containing protein C18H1... [more]
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Properties
Property NameValue
Genbank descriptionC05055G12SK FlavSen1 Citrus clementina cDNA clone C05055G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294778 ID=CX294778; Name=CX294778; organism=Citrus clementina; type=EST; length=525bp
ATAATTATTTCATTAGCGGTTCAATCGATGGGAAAGTTCGCATCTGGGAA
GTGCGTCGCTGTCAGGTTGTTGATTACACTGATATAAGAGAGATAGTCTC
AGCTGTGTGTTATTGCCCTGATGGAAAGGGCGGAATTGTGGGTACGATGA
CTGGCAACTGCCGTTTCTACGATATTAAAGATAATCAATTGTATCAGCAA
AAACAAATTTGCTTACAGGGCAAAAAGAAGTTACCAGGCAAGAGGATAAC
TGGCTTTCAGTTTTCTCCAAGTGATCCCAGCAAAGTGATTGTCACGTCTG
CCGATTCACTGGTCCGAGTACTTTGTGGGGAGAATGTCGTTGGGAAATTT
AAGGCATCAGCTTTTCGAGTTGCAGGAAGCCAGATGTTTGCAACTTTTAC
CTCAGATGGGAAACATGTTGTCTCACCCAGTGAAGATTCCAACATCTACA
TCTGGAACTACTCGAACCAGGACAAGTCCTCTTCTCGATCAAAGAGCATT
TGGTCCTGCGAGAGCTTCCTATCCC
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