CX294831

Overview
NameCX294831
Unique NameCX294831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig595 contig Ccv1_Contig595:308..969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 1.130e-107
Identity = 196/206 (95.15%), Postives = 200/206 (97.09%), Query Frame = 3 
Query:   21 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF-VAQSSVQPSLI 635
            RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGYMFTTTAEREIVRD+KEKLAYVALDYEQELETAKSSSSVEKNYELPDGQ+ITIGAERF   +   QPSLI
Sbjct:   64 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTTAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLI 269
[Close]
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACT2_SOLLC (Actin-51 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 7.325e-107
Identity = 193/206 (93.69%), Postives = 199/206 (96.60%), Query Frame = 3 
Query:   21 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF-VAQSSVQPSLI 635
            RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQE+ETA+SSSS+EKNYELPDGQ+ITIGAERF   +   QPS+I
Sbjct:   44 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQEIETARSSSSIEKNYELPDGQVITIGAERFGCPEVLFQPSMI 249
[Close]
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACT1_PEA (Actin-1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.131e-106
Identity = 192/206 (93.20%), Postives = 200/206 (97.09%), Query Frame = 3 
Query:   21 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF-VAQSSVQPSLI 635
            RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT++LMKILTERGYMFTT+AEREIVRD+KEKLAYVALDYEQELETAKSSSS+EKNYELPDGQ+ITIGAERF   +   QPS+I
Sbjct:   63 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTESLMKILTERGYMFTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSMI 268
[Close]
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACT2_PEA (Actin-2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 6.201e-106
Identity = 191/206 (92.72%), Postives = 200/206 (97.09%), Query Frame = 3 
Query:   21 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF-VAQSSVQPSLI 635
            RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVL+SGDGVSHTVPIYEGYALPHAILRLDLAGRDLT++LMKILTERGYMFTT+AEREIVRD+KEKLAYVALDYEQELETAKSSSS+EKNYELPDGQ+ITIGAERF   +   QPS+I
Sbjct:   63 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLESGDGVSHTVPIYEGYALPHAILRLDLAGRDLTESLMKILTERGYMFTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSMI 268
[Close]
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACT6_TOBAC (Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.058e-105
Identity = 193/206 (93.69%), Postives = 198/206 (96.12%), Query Frame = 3 
Query:   21 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF-VAQSSVQPSLI 635
            RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVA EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYMFTTTAEREIVRDMKE+LAYVALDYEQEL+TAKSSSSVEKNYELPDGQ+ITIGAERF   +   QPS+I
Sbjct:   44 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAHEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYMFTTTAEREIVRDMKEELAYVALDYEQELDTAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSMI 249
[Close]
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 382.104 bits (980), Expect = 1.381e-105
Identity = 190/206 (92.23%), Postives = 198/206 (96.12%), Query Frame = 3 
Query:   21 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF-VAQSSVQPSLI 635
            RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTT+AEREIVRDMKEKLAY+ALDYEQELETAK+SS+VEK YELPDGQ+ITIGAERF   + +VQPS+I
Sbjct:   64 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTERGYTFTTSAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKTYELPDGQVITIGAERFRCPEVTVQPSMI 269
[Close]
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSJ (Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE=2 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 2.356e-105
Identity = 191/206 (92.72%), Postives = 199/206 (96.60%), Query Frame = 3 
Query:   21 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF-VAQSSVQPSLI 635
            RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMTQIMFETF+VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGY FTT+AEREIVRD+KEKLAYVALDYEQELETAKSSSSVEK+YELPDGQ+ITIGAERF   +   QPSLI
Sbjct:   64 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFSVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYSFTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEKSYELPDGQVITIGAERFRCPEVMFQPSLI 269
[Close]
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSI (Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 2.356e-105
Identity = 191/206 (92.72%), Postives = 199/206 (96.60%), Query Frame = 3 
Query:   21 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF-VAQSSVQPSLI 635
            RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMTQIMFETF+VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGY FTT+AEREIVRD+KEKLAYVALDYEQELETAKSSSSVEK+YELPDGQ+ITIGAERF   +   QPSLI
Sbjct:   64 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFSVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYSFTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEKSYELPDGQVITIGAERFRCPEVMFQPSLI 269
[Close]
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 380.563 bits (976), Expect = 4.019e-105
Identity = 190/206 (92.23%), Postives = 198/206 (96.12%), Query Frame = 3 
Query:   21 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF-VAQSSVQPSLI 635
            RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRV+P+EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTT+AEREIVRDMKEKLAYVALDYEQELETAKSSS+VEK+YELPDGQ+ITIGAERF   +   QPSL+
Sbjct:   64 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVSPDEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDCLMKILTERGYSFTTSAEREIVRDMKEKLAYVALDYEQELETAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLV 269
[Close]
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACT12_SOLTU (Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100 PE=3 SV=1)

HSP 1 Score: 380.563 bits (976), Expect = 4.019e-105
Identity = 190/206 (92.23%), Postives = 198/206 (96.12%), Query Frame = 3 
Query:   21 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF-VAQSSVQPSLI 635
            RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRV+P+EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTT+AEREIVRDMKEKLAYVALDYEQELETAKSSS+VEK+YELPDGQ+ITIGAERF   +   QPSL+
Sbjct:   44 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVSPDEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDCLMKILTERGYSFTTSAEREIVRDMKEKLAYVALDYEQELETAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLV 249
The following BLAST results are available for this feature:
BLAST of CX294831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
ACT7_ARATH1.130e-10795.15Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]
ACT2_SOLLC7.325e-10793.69Actin-51 (Fragment) OS=Solanum lycopersicum PE=3 S... [more]
ACT1_PEA2.131e-10693.20Actin-1 OS=Pisum sativum PE=2 SV=1[more]
ACT2_PEA6.201e-10692.72Actin-2 OS=Pisum sativum PE=2 SV=1[more]
ACT6_TOBAC1.058e-10593.69Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=... [more]
ACT3_PEA1.381e-10592.23Actin-3 OS=Pisum sativum PE=2 SV=1[more]
ACT2_ORYSJ2.356e-10592.72Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE... [more]
ACT2_ORYSI2.356e-10592.72Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3... [more]
ACT13_SOLTU4.019e-10592.23Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1[more]
ACT12_SOLTU4.019e-10592.23Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100... [more]

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Properties
Property NameValue
Genbank descriptionC05056E02SK PhIFruit1 Citrus clementina cDNA clone C05056E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294831 ID=CX294831; Name=CX294831; organism=Citrus clementina; type=EST; length=662bp
CTCGTGCCGAATTCGGCACGAGGGGTATTCTTACTTTGAAATACCCAATT
GAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCATCA
TACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCTTC
TCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCCAA
ATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAGGC
TGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATT
CTGGTGATGGTGTGTCTCATACTGTACCAATTTATGAGGGATATGCCCTT
CCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGC
ATTGATGAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCACAGCCG
AACGGGAAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCCTA
GACTATGAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATCTGTTGAGAA
GAACTATGAGCTGCCTGATGGCCAGATCATCACCATTGGAGCTGAAAGAT
TCGTTGCCCAGAGTTCTGTTCAGCCATCTCTCATCGAATGGAGCTGCTGT
ATCATGAACTAC
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