CX294842

Overview
NameCX294842
Unique NameCX294842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294842_ssr105 microsatellite CX294842_ssr105:105..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig584 contig Ccv1_Contig584:1..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294842 vs. ExPASy Swiss-Prot
Match: KPRS1_ARATH (Ribose-phosphate pyrophosphokinase 1 OS=Arabidopsis thaliana GN=PRS1 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.449e-26
Identity = 56/76 (73.68%), Postives = 68/76 (89.47%), Query Frame = 3
Query:  330 AAVRCDMAEALNFPNGKPNIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKIN 557
            A V+CDM E+LN  NG P+IP++NERTLPKFLE+ARMEK+VNR TN R+KLFSGTANPAL+QEIA YMG++LGK+N
Sbjct:   46 ACVKCDMPESLNVGNGNPSIPIINERTLPKFLESARMEKSVNR-TNTRLKLFSGTANPALAQEIAWYMGLDLGKVN 120          
BLAST of CX294842 vs. ExPASy Swiss-Prot
Match: KPRS2_SPIOL (Ribose-phosphate pyrophosphokinase 2, chloroplastic OS=Spinacia oleracea GN=PRS2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 42/74 (56.76%), Postives = 61/74 (82.43%), Query Frame = 3
Query:  333 AVRCDMAEALNFPNGKPNIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKI 554
            +V+C+  E L   NGKP++P+L+E++LPKFL + R+E +VNR +N R+KLFSG ANPAL++E+A YMG+ELGK+
Sbjct:   39 SVKCNTVEPLKLVNGKPSVPILDEQSLPKFLHSKRLESSVNR-SNTRLKLFSGLANPALAKEVAWYMGLELGKV 111          
BLAST of CX294842 vs. ExPASy Swiss-Prot
Match: KPRS2_ARATH (Ribose-phosphate pyrophosphokinase 2 OS=Arabidopsis thaliana GN=PRS2 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.457e-18
Identity = 42/80 (52.50%), Postives = 63/80 (78.75%), Query Frame = 3
Query:  318 VCNAAAVRCDMAEALNFPNGKPNIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKIN 557
            +C +   +C++ +ALN   G   +P++NE T+PKF +++R+EK+V+R  N ++KLFSGTANPALSQEIA YMG+ELGK++
Sbjct:   42 ICVSGYAKCNLPKALN---GNARVPIINETTIPKFFDSSRLEKSVSRN-NTKLKLFSGTANPALSQEIAWYMGLELGKVS 117          
The following BLAST results are available for this feature:
BLAST of CX294842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
KPRS1_ARATH3.449e-2673.68Ribose-phosphate pyrophosphokinase 1 OS=Arabidopsi... [more]
KPRS2_SPIOL6.965e-1956.76Ribose-phosphate pyrophosphokinase 2, chloroplasti... [more]
KPRS2_ARATH3.457e-1852.50Ribose-phosphate pyrophosphokinase 2 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC05056F03SK PhIFruit1 Citrus clementina cDNA clone C05056F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294842 ID=CX294842; Name=CX294842; organism=Citrus clementina; type=EST; length=557bp
CTCGTGCCGAATTCGGCACGAGGCGACGAAGCAAAATAGCCAAAGAAGAA
GAAAAAGCAACCGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACA
AAAGGAAAGAAAGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAG
AGAGAGCTGAAACAACACAACAGATAACAATGGCTTCGCTGACGATGCCG
CGCCCTTCACAATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCG
CTGTTCTTTCGGTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACT
CTCGCTCTCGGGTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATG
GCTGAGGCATTGAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAA
CGAACGGACGCTGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTG
TCAACAGAACTACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAAT
CCTGCTCTTTCCCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAA
GATCAAC
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