CX294850

Overview
NameCX294850
Unique NameCX294850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig585 contig Ccv1_Contig585:1..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 265.774 bits (678), Expect = 9.694e-71
Identity = 127/167 (76.05%), Postives = 137/167 (82.04%), Query Frame = 3
Query:   45 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESGRTSHTVVIED 545
            M NP+VFFDILIGKM  GRVVMELFADVTP+TA NFRALCTGE GIG +GK LHYKGS FHRIIP FMCQ            ESIYG KF DENFK+KHTGPGILSMAN+GPNTNGSQFFICT+KT WLDGKHVVFGKVVDGY+V+K ME+VGS+ G  S  VVIED
Sbjct:    1 MANPKVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIED 167          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 1.892e-66
Identity = 120/167 (71.86%), Postives = 132/167 (79.04%), Query Frame = 3
Query:   45 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESGRTSHTVVIED 545
            M NPRVFFD+ +G    GR+VMELFAD TP+TAENFRALCTGEKG G SGKPLHYK S+FHR+IP FMCQ            ESIYG KFADENF  KHTGPGILSMANAGPNTNGSQFFICT KT WLDGKHVVFG+VV+G  V+K +E VGS SGRT+  VV+ED
Sbjct:    1 MPNPRVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVED 167          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 5.505e-66
Identity = 117/167 (70.06%), Postives = 134/167 (80.24%), Query Frame = 3
Query:   45 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESGRTSHTVVIED 545
            M+NP+VFFD+ I     GR+VMEL+AD TP+TAENFRALCTGEKG+G SGKPLHYKGSTFHR+IPNFMCQ            ESIYG KFADENF  +HTGPGILSMANAG  TNGSQFFICT+KT WLDGKHVVFGKV++G +V++D+E VGS SG+TS  V I D
Sbjct:    1 MSNPKVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIAD 167          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 7.189e-66
Identity = 116/166 (69.88%), Postives = 135/166 (81.33%), Query Frame = 3
Query:   48 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESGRTSHTVVIED 545
            TNP+V+FD+ +G  + GR+VMEL+AD TP+TAENFRALCTGE+GIG  GKPLHYKGS+FHR+IP FMCQ            ESIYG KF DENF  KHTGPGILSMANAG NTNGSQFFICT+KT WLDGKHVVFG+VV+G +V++D+E VGS+SGRTS  VVI D
Sbjct:    3 TNPKVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIAD 168          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 4.660e-65
Identity = 121/167 (72.46%), Postives = 128/167 (76.65%), Query Frame = 3
Query:   45 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESGRTSHTVVIED 545
            M NP+VFFD+ IG    GRVVMELFAD TPKTAENFRALCTGEKG+G  GKPLHYKGSTFHR+IP FMCQ            ESIYG KF DENF  KHTGPGILSMANAGP TNGSQFFICT KT WL+GKHVVFG+VV+G  VIK  E VGS SGR S  VVI D
Sbjct:    1 MANPKVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIAD 167          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 1.356e-64
Identity = 115/167 (68.86%), Postives = 131/167 (78.44%), Query Frame = 3
Query:   45 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESGRTSHTVVIED 545
            M NP+V+FD+ +G    GR+VMEL+AD  P+TAENFRALCTGE+GIG SGKPLHYKGS FHR+IP FMCQ            ESIYGMKF DENF  KHTGPGILSM NAG NTNGSQFFICT+KT WLDGKHVVFG+VV+G  V++D+E VGS+SGRTS  VV  D
Sbjct:    1 MVNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCD 167          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 7.440e-63
Identity = 112/166 (67.47%), Postives = 131/166 (78.92%), Query Frame = 3
Query:   48 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESGRTSHTVVIED 545
            ++P+VFFD+ IG    G++VMEL+ D TPKTAENFRALCTGEKG+G SGKPLH+KGS+FHR+IPNFMCQ            ESIYG KF DENF+ KHTGPGILSMANAG NTNGSQFFICT KT WLDGKHVVFG+VV+G  V+K +E +GS SG+ +  VVI D
Sbjct:    3 SHPKVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIAD 168          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.832e-61
Identity = 113/167 (67.66%), Postives = 126/167 (75.45%), Query Frame = 3
Query:   45 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESGRTSHTVVIED 545
            M+NPRVFFD+ +     GR+ MELFAD TP TAENFRALCTGEKG+G  GKPLH+KGS FHR+IP FMCQ            ESIYG KF DENF  KHTG GILSMAN+GPNTNGSQFFICT KT WLDGKHVVFG+VV G  V+K +E VGS+SG+TS  V I D
Sbjct:    1 MSNPRVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITD 167          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 4.082e-61
Identity = 110/167 (65.87%), Postives = 128/167 (76.65%), Query Frame = 3
Query:   45 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESGRTSHTVVIED 545
            M  P+V+FD+ I     GR+VMEL+ D TP+TAENFRALCTGEKG+G +GKPLH+KGS FHR+IPNFMCQ            ESIYG KF DENF+ KHTGPGILSMANAG NTNGSQFFICT KT WLDGKHVVFG+VV+G  V+K +E VGS SG+ +  VV+ D
Sbjct:    1 MAFPKVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVAD 167          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 5.332e-61
Identity = 110/167 (65.87%), Postives = 125/167 (74.85%), Query Frame = 3
Query:   45 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESGRTSHTVVIED 545
            M NPRVFFD+ +G    GR+VMEL+A+  PKTAENFRALCTGEKG+G SGKPLHYKGSTFHR+IP FMCQ            ESIYG KF DE F  K   PG+LSMANAGPNTNGSQFFICT  TPWLDGKHVVFG+VV+G  V+K +E VG+ +G TS  V + D
Sbjct:    1 MANPRVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVAD 167          
The following BLAST results are available for this feature:
BLAST of CX294850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
CP19C_ARATH9.694e-7176.05Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
CYPH_CATRO1.892e-6671.86Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_LUPLU5.505e-6670.06Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP19A_ARATH7.189e-6669.88Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CYPH_SOLLC4.660e-6572.46Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CYPH_BRANA1.356e-6468.86Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CP19B_ARATH7.440e-6367.47Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CP18D_ARATH1.832e-6167.66Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CP18C_ARATH4.082e-6165.87Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CYPH_MAIZE5.332e-6165.87Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]

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Properties
Property NameValue
Genbank descriptionC05056F11SK PhIFruit1 Citrus clementina cDNA clone C05056F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294850 ID=CX294850; Name=CX294850; organism=Citrus clementina; type=EST; length=547bp
TCCAGGTCGAATTACAGCAAAAGGCTTTTGATTGGATAGAAAAAATGACG
AATCCAAGGGTTTTCTTTGACATTCTGATTGGAAAGATGAACAAGGGGCG
AGTTGTGATGGAGCTATTTGCTGACGTCACCCCAAAAACTGCTGAAAACT
TCCGTGCTCTCTGCACTGGTGAGAAAGGGATTGGAACGTCTGGGAAGCCA
CTACACTATAAGGGCTCGACATTTCACCGCATAATCCCTAACTTCATGTG
TCAGGGGGGAGATTTCACTCGGGGAAATGGAACTGGAGGAGAATCGATAT
ATGGGATGAAGTTTGCTGATGAGAACTTCAAGATGAAGCATACTGGGCCT
GGAATTCTGTCAATGGCTAATGCTGGACCTAACACTAATGGTTCACAGTT
TTTTATATGCACTCAGAAAACACCATGGCTTGATGGCAAACATGTTGTGT
TTGGGAAAGTGGTAGACGGTTACAGTGTCATCAAGGATATGGAGAACGTG
GGTTCTGAGAGTGGGAGGACTTCGCATACAGTTGTGATTGAAGACTG
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