CX294858 | Citrus Genome Database

Overview


Name	CX294858
Unique Name	CX294858
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	615

Libraries


Library Name	Type
PhIFruit1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX294858 vs. ExPASy Swiss-Prot
Match: CCL11_ARATH (Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.232e-66
Identity = 85/101 (84.16%), Postives = 96/101 (95.05%), Query Frame = 3

Query:  309 PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSSTERHILKEMGFVCHVD 611
            PQAVMATGQVLF RFYCK+S A+FDVKIVAAS VWLASKLEE+P+KARQVIIVFHRMECRRE LP+EHLD+++KKFSELK+E+S TERHILKEMGFVCHV+
Sbjct:   52 PQAVMATGQVLFQRFYCKKSLAKFDVKIVAASCVWLASKLEENPKKARQVIIVFHRMECRRENLPLEHLDMYAKKFSELKVELSRTERHILKEMGFVCHVE 152

HSP 2 Score: 93.2041 bits (230), Expect = 1.232e-66
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1

Query:   43 MIYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKL 195
            MIYTAIDNFYL+DEQLK SPSRKDGIDE TE +LRIYGCDLIQE GILLKL
Sbjct:    1 MIYTAIDNFYLSDEQLKASPSRKDGIDETTEISLRIYGCDLIQEGGILLKL 51

[Close]

BLAST of CX294858 vs. ExPASy Swiss-Prot
Match: CCL11_ORYSJ (Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYCL1-1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.247e-64
Identity = 76/101 (75.25%), Postives = 90/101 (89.11%), Query Frame = 3

Query:  309 PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSSTERHILKEMGFVCHVD 611
            PQAVMAT QVLFHRFYCK+SF RF VK VAAS VWLA KLEESPR+++ +IIVFHRMECRRE +PIEHLD+FSKK+S+LK ++  TERH+LKEMGF+CHV+
Sbjct:   52 PQAVMATAQVLFHRFYCKKSFVRFSVKRVAASCVWLAGKLEESPRRSKHIIIVFHRMECRRENVPIEHLDVFSKKYSDLKHDLVRTERHLLKEMGFICHVE 152

HSP 2 Score: 98.9821 bits (245), Expect = 3.247e-64
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 1

Query:   43 MIYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKL 195
            MIYTAID FYLTDEQL+DSPSRKDGIDEATET LR+YGCDLIQESGILLKL
Sbjct:    1 MIYTAIDTFYLTDEQLRDSPSRKDGIDEATETALRVYGCDLIQESGILLKL 51

[Close]

BLAST of CX294858 vs. ExPASy Swiss-Prot
Match: CCNL1_DANRE (Cyclin-L1 OS=Danio rerio GN=ccnl1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.219e-26
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 3

Query:  309 PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRME--CRREGLPIEHLDLFSKKFSELKMEMSSTERHILKEMGFVCHV 608
            PQ  MATGQV+F RF+  +SF + + +IVA + V LASK+EESPR+ R VI VFH ++    ++  P+    +  + +   K ++   ER ILKE+GF  HV
Sbjct:   80 PQVAMATGQVIFQRFFFSKSFVKHNFEIVAMACVNLASKIEESPRRVRDVINVFHHLKQGKGKKSTPL----ILDQNYINTKNQVIKAERRILKELGFCVHV 177

HSP 2 Score: 56.225 bits (134), Expect = 6.219e-26
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1

Query:   46 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKL 195
            ++ AIDN  + +++L  +PS  DG+D  TET LRI GC+ IQ +GILL+L
Sbjct:   30 VFLAIDNSIIPEDRLSTTPSMLDGLDHETETDLRILGCERIQSAGILLRL 79

[Close]

BLAST of CX294858 vs. ExPASy Swiss-Prot
Match: CCNL1_XENLA (Cyclin-L1 OS=Xenopus laevis GN=ccnl1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.323e-25
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 3

Query:  309 PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFH---RMECRREGLPIEHLDLFSKKFSELKMEMSSTERHILKEMGFVCHV 608
            PQ  MATGQVLFHRF+  +SF +   +I+A + + LASK+EE+PR+ R VI V H   ++  +R   P+    +  + +   K  +   ER ILKE+GF  HV
Sbjct:   80 PQVAMATGQVLFHRFFYSKSFVKHSFEIIAMACINLASKIEEAPRRIRDVINVCHHLRQIRAKRTPSPL----ILDQSYINTKNHVIKAERRILKELGFCVHV 178

HSP 2 Score: 55.8398 bits (133), Expect = 2.323e-25
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1

Query:   46 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKL 195
            +Y  ID   + +E+L  +PS  DG+D  TET LRI GC+LIQ +GILL+L
Sbjct:   30 VYLTIDYSLIPEERLSPTPSMSDGLDLNTETDLRILGCELIQSAGILLRL 79

[Close]

BLAST of CX294858 vs. ExPASy Swiss-Prot
Match: CCNL1_MOUSE (Cyclin-L1 OS=Mus musculus GN=Ccnl1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.020e-25
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = 3

Query:  309 PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSSTERHILKEMGFVCHV 608
            PQ  MATGQVLFHRF+  +SF +   +IVA + + LASK+EE+PR+ R VI VFH +   R G       +  + +   K ++   ER +LKE+GF  HV
Sbjct:  106 PQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLR-GKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHV 204

HSP 2 Score: 52.373 bits (124), Expect = 3.020e-25
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1

Query:   58 IDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKL 195
            ID+  + +E+L  +PS +DG+D  +ET LRI GC+LIQ +GILL+L
Sbjct:   60 IDHSLIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRL 105

[Close]

BLAST of CX294858 vs. ExPASy Swiss-Prot
Match: CCNL1_RAT (Cyclin-L1 OS=Rattus norvegicus GN=Ccnl1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.020e-25
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = 3

Query:  309 PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSSTERHILKEMGFVCHV 608
            PQ  MATGQVLFHRF+  +SF +   +IVA + + LASK+EE+PR+ R VI VFH +   R G       +  + +   K ++   ER +LKE+GF  HV
Sbjct:  101 PQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLR-GKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHV 199

HSP 2 Score: 52.373 bits (124), Expect = 3.020e-25
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1

Query:   58 IDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKL 195
            ID+  + +E+L  +PS +DG+D  +ET LRI GC+LIQ +GILL+L
Sbjct:   55 IDHSVIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRL 100

[Close]

BLAST of CX294858 vs. ExPASy Swiss-Prot
Match: CCNL1_HUMAN (Cyclin-L1 OS=Homo sapiens GN=CCNL1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.020e-25
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = 3

Query:  309 PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSSTERHILKEMGFVCHV 608
            PQ  MATGQVLFHRF+  +SF +   +IVA + + LASK+EE+PR+ R VI VFH +   R G       +  + +   K ++   ER +LKE+GF  HV
Sbjct:  100 PQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLR-GKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHV 198

HSP 2 Score: 52.373 bits (124), Expect = 3.020e-25
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1

Query:   58 IDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKL 195
            ID+  + +E+L  +PS +DG+D  +ET LRI GC+LIQ +GILL+L
Sbjct:   54 IDHSLIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRL 99

[Close]

BLAST of CX294858 vs. ExPASy Swiss-Prot
Match: CCNL2_HUMAN (Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.931e-25
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 3

Query:  309 PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRM-ECRREGLPIEHLDLFSKKFSELKMEMSSTERHILKEMGFVCHV 608
            PQ  MATGQVLF RF+  +SF +  ++ V+ + V LASK+EE+PR+ R VI VFHR+ + R +  P+    L  + +  LK ++   ER +LKE+GF  HV
Sbjct:   95 PQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPL--LLDQDYVNLKNQIIKAERRVLKELGFCVHV 193

HSP 2 Score: 52.373 bits (124), Expect = 3.931e-25
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1

Query:   46 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKL 195
            +   ++N  L D++L+ +PS   G+D  TET LR+ GC+LIQ +GILL+L
Sbjct:   45 VLITLENCLLPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRL 94

[Close]

BLAST of CX294858 vs. ExPASy Swiss-Prot
Match: CCNL2_MOUSE (Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-25
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 3

Query:  309 PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSSTERHILKEMGFVCHV 608
            PQ  MATGQVLF RF+  +SF +  ++ V+ + V LASK+EE+PR+ R VI VFHR+   RE      L +  +++  LK ++   ER +LKE+GF  HV
Sbjct:   93 PQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRHLREKKKPVPL-VLDQEYVNLKNQIIKAERRVLKELGFCVHV 191

HSP 2 Score: 51.6026 bits (122), Expect = 3.932e-25
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1

Query:   46 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKL 195
            +   ++N  L D++L+ +PS   G+D  TET LR+ GC+LIQ +GILL+L
Sbjct:   43 VLITLENCLLPDDKLRFTPSMSSGLDVDTETGLRVVGCELIQAAGILLRL 92

[Close]

BLAST of CX294858 vs. ExPASy Swiss-Prot
Match: CCNL2_RAT (Cyclin-L2 OS=Rattus norvegicus GN=Ccnl2 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.116e-25
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 3

Query:  309 PQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSSTERHILKEMGFVCHV 608
            PQ  MATGQVLF RF+  +SF +  ++ V+ + V LASK+EE+PR+ R VI VFHR+   RE      L +  +++  LK ++   ER +LKE+GF  HV
Sbjct:   93 PQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRHLREKKKPVPL-VLDQEYVNLKNQIIKAERRVLKELGFCVHV 191

HSP 2 Score: 51.2174 bits (121), Expect = 5.116e-25
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1

Query:   46 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKL 195
            +   ++N  L D++L+ +PS   G+D  TET LR+ GC+LIQ +GILL+L
Sbjct:   43 VLITLENCLLPDDKLRFTPSMSSGLDIDTETGLRVVGCELIQAAGILLRL 92

The following BLAST results are available for this feature:

BLAST of CX294858 vs. ExPASy Swiss-Prot

BLAST of CX294858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15


Match Name	E-value	Identity	Description
CCL11_ARATH	1.232e-66	84.16	Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=...	[more]
CCL11_ORYSJ	3.247e-64	75.25	Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYC...	[more]
CCNL1_DANRE	6.219e-26	43.14	Cyclin-L1 OS=Danio rerio GN=ccnl1 PE=1 SV=1	[more]
CCNL1_XENLA	2.323e-25	41.75	Cyclin-L1 OS=Xenopus laevis GN=ccnl1 PE=2 SV=2	[more]
CCNL1_MOUSE	3.020e-25	44.00	Cyclin-L1 OS=Mus musculus GN=Ccnl1 PE=2 SV=1	[more]
CCNL1_RAT	3.020e-25	44.00	Cyclin-L1 OS=Rattus norvegicus GN=Ccnl1 PE=1 SV=1	[more]
CCNL1_HUMAN	3.020e-25	44.00	Cyclin-L1 OS=Homo sapiens GN=CCNL1 PE=1 SV=1	[more]
CCNL2_HUMAN	3.931e-25	44.55	Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1	[more]
CCNL2_MOUSE	3.932e-25	45.00	Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1	[more]
CCNL2_RAT	5.116e-25	45.00	Cyclin-L2 OS=Rattus norvegicus GN=Ccnl2 PE=2 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	C05056G07SK PhIFruit1 Citrus clementina cDNA clone C05056G07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX294858 ID=CX294858; Name=CX294858; organism=Citrus clementina; type=EST; length=615bp
CAAATCCTCCAGGTAGTTGAAAGTGAGGGATCTTGAGCAAGAATGATTTA
CACGGCAATTGATAATTTTTACCTAACAGATGAGCAGCTAAAGGACTCAC
CGTCTAGAAAAGATGGCATTGATGAAGCAACAGAAACCACTTTGAGAATC
TATGGCTGTGACCTCATTCAAGAAAGTGGAATTTTGCTTAAATTGTATCC
TTCTACTGTTTTGATATTCAGTTTATTTTCTATTTTTAAGTTTTTGTTTG
TCAGTGTCCTATGCAATATGCTGGTTCCATTGTTTCCTTTATTTGTGTTG
TTTATAGACCGCAAGCTGTAATGGCTACTGGTCAGGTTTTATTCCATCGT
TTCTATTGCAAGAGATCATTTGCTCGTTTTGATGTGAAGATAGTGGCTGC
TAGTTCCGTATGGCTTGCATCAAAGCTGGAGGAGAGCCCTCGGAAAGCAA
GGCAAGTAATCATTGTTTTCCATAGAATGGAATGCAGAAGGGAGGGCTTA
CCCATAGAGCATTTGGATTTGTTTTCAAAGAAATTTTCAGAATTGAAAAT
GGAAATGAGCAGTACAGAGAGACATATATTGAAAGAGATGGGCTTTGTTT
GTCACGTTGACACCC