CX294892 | Citrus Genome Database

Overview


Name	CX294892
Unique Name	CX294892
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	623

Libraries


Library Name	Type
PhIFruit1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CX294892_ssr151	microsatellite	CX294892_ssr151:151..162.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig591	contig	Ccv1_Contig591:1..623.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DER22_ARATH (Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.437e-53
Identity = 104/141 (73.76%), Postives = 117/141 (82.98%), Query Frame = 1

Query:  193 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKSFSLA-FIDLMMVYV 612
            MAQAVE+WYKQMPIITR+YLTAA++TTVGCSLDIISP+NL L+PTLVVK YQ+WRL+TNFL+FRK            ARYCKLLEENSFRG+TADFLYMLLFGA+ LTG VLIGGMIPYLS SFAK   L+  +  MMVYV
Sbjct:    1 MAQAVEEWYKQMPIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNFLYFRKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSASFAKIIFLSNSLTFMMVYV 141

[Close]

BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DER21_ARATH (Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 7.091e-53
Identity = 104/141 (73.76%), Postives = 116/141 (82.27%), Query Frame = 1

Query:  193 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKSFSLA-FIDLMMVYV 612
            MAQAVE+WYKQMPIITR+YLTAA+VTTVGCSL+IISP+NL L+PTLVVK YQFWRL+TNFL+FRK            ARYCKLLEENSFRG+T DFLYMLLFGAT LTG VLIGGMIPYLS SF+K   L+  +  MMVYV
Sbjct:    1 MAQAVEEWYKQMPIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGKTTDFLYMLLFGATVLTGIVLIGGMIPYLSVSFSKIIFLSNSLTFMMVYV 141

[Close]

BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DERL2_ORYSJ (Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.637e-51
Identity = 98/141 (69.50%), Postives = 116/141 (82.27%), Query Frame = 1

Query:  193 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKSFSLA-FIDLMMVYV 612
            MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRK            ARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPY+SE+FA+   L+  +  MMVYV
Sbjct:    1 MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYV 141

[Close]

BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DER22_MAIZE (Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.637e-51
Identity = 98/141 (69.50%), Postives = 116/141 (82.27%), Query Frame = 1

Query:  193 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKSFSLA-FIDLMMVYV 612
            MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRK            ARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPY+SE+FA+   L+  +  MMVYV
Sbjct:    1 MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYV 141

[Close]

BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DER21_MAIZE (Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 3.294e-50
Identity = 97/141 (68.79%), Postives = 115/141 (81.56%), Query Frame = 1

Query:  193 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKSFSLA-FIDLMMVYV 612
            MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRK            ARYCKLLEENSFRGRTADF YMLLFGAT LT  VLIGGMIPY+SE+FA+   L+  +  MMVYV
Sbjct:    1 MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVLIGGMIPYISETFARILFLSNSLTFMMVYV 141

[Close]

BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DERL2_PONAB (Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.916e-24
Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = 1

Query:  217 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKSFSLAFIDLMMVYV 612
            Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T   L   ++ +L ++F          +M+VYV
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLV-FLGQAFT---------IMLVYV 131

[Close]

BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DERL2_MOUSE (Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.916e-24
Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = 1

Query:  217 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKSFSLAFIDLMMVYV 612
            Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T   L   ++ +L ++F          +M+VYV
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLV-FLGQAFT---------IMLVYV 131

[Close]

BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DERL2_HUMAN (Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.916e-24
Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = 1

Query:  217 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKSFSLAFIDLMMVYV 612
            Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T   L   ++ +L ++F          +M+VYV
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLV-FLGQAFT---------IMLVYV 131

[Close]

BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DERL3_BOVIN (Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.433e-23
Identity = 51/114 (44.74%), Postives = 70/114 (61.40%), Query Frame = 1

Query:  199 QAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGM 540
            Q +   + Q+P +TRTY  A ++TT    L+++SPF L  +P LV + +Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T   L+G +
Sbjct:    4 QGLATEFLQVPAVTRTYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITNFLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL 117

[Close]

BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DERL3_HUMAN (Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.225e-22
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 1

Query:  217 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGM 540
            + Q+P +TR Y  A ++TT    L+++SPF L  +P LV + +Q WRL+TNFLFF               RYC++LEE SFRGRTADF++M LFG   +T   L+G +
Sbjct:   10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL 117

The following BLAST results are available for this feature:

BLAST of CX294892 vs. ExPASy Swiss-Prot

BLAST of CX294892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17


Match Name	E-value	Identity	Description
DER22_ARATH	2.437e-53	73.76	Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 ...	[more]
DER21_ARATH	7.091e-53	73.76	Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 ...	[more]
DERL2_ORYSJ	6.637e-51	69.50	Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 P...	[more]
DER22_MAIZE	6.637e-51	69.50	Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1	[more]
DER21_MAIZE	3.294e-50	68.79	Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2	[more]
DERL2_PONAB	6.916e-24	42.42	Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1	[more]
DERL2_MOUSE	6.916e-24	42.42	Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2	[more]
DERL2_HUMAN	6.916e-24	42.42	Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1	[more]
DERL3_BOVIN	3.433e-23	44.74	Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1	[more]
DERL3_HUMAN	2.225e-22	44.44	Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	C05057B09SK PhIFruit1 Citrus clementina cDNA clone C05057B09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX294892 ID=CX294892; Name=CX294892; organism=Citrus clementina; type=EST; length=623bp
CTCGTGCCGAATTCGGCACGAGGAATTGAAAGCTCTCTCCCGATCTATCT
CCACAATCAAAACCCCCCCTTTTTTTTTTTCACCACTTCACTCAGAAATC
TTTAAATTTTCAAAAAGAAAAAAAAAATCAGCACACTTTCAGGGCTCTAG
AGATAGATAGATAAACCATATAGTCAAAAAAATTAAAAGAAAATGGCTCA
AGCTGTTGAAGATTGGTACAAACAGATGCCTATCATCACCCGCACGTATC
TCACAGCCGCTATCGTCACCACCGTCGGCTGCTCTCTCGATATAATATCT
CCTTTTAATCTGTGCTTGCACCCAACGTTAGTGGTTAAGCATTATCAGTT
TTGGCGCCTTATCACCAATTTTCTCTTCTTCCGGAAAATGGATTTAGATT
TTTTGTTCCATATGTTTTTTCTCGCACGATACTGCAAGCTTCTTGAAGAG
AATTCCTTCAGGGGAAGGACTGCAGATTTCTTGTACATGCTTTTATTTGG
AGCCACTTTTCTAACCGGCACTGTTCTTATTGGGGGGATGATACCTTACT
TGTCAGAATCATTTGCAAAATCATTTTCCTTAGCATTCATTGACCTCATG
ATGGTTTATGTTGAGCAACAAAT