CX294906

Overview
NameCX294906
Unique NameCX294906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294906 vs. ExPASy Swiss-Prot
Match: HIBCH_CHICK (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 62/116 (53.45%), Postives = 73/116 (62.93%), Query Frame = 1
Query:  256 RHEDWLCHHIHAYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNT 603
            R E  L + I   KK  VAL  GITMGGG  L V   F V TEKTVF+ PE +IG   D G  +   RL G +G  LALTG RL G++++ AG+ATHFV S KLPELEK LI L +
Sbjct:  118 REEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHLLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKS 233          
BLAST of CX294906 vs. ExPASy Swiss-Prot
Match: HIBCH_SCHPO (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Schizosaccharomyces pombe GN=ehd3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 53/113 (46.90%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  271 LCHHIHAYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGD 609
            L H +  Y+K  VAL +GITMGGG+ L + + F +  E T+F+ PE  IG+ TD   SF  SRLPG+ G +L LT   + G + +  G+ATHFVP    P LE RL  LNT D
Sbjct:  144 LSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFGTYLGLTSQIVKGYDCLRTGIATHFVPKHMFPHLEDRLAELNTSD 256          
BLAST of CX294906 vs. ExPASy Swiss-Prot
Match: HIBCH_XENTR (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 58/114 (50.88%), Postives = 72/114 (63.16%), Query Frame = 1
Query:  256 RHEDWLCHHIHAYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGL 597
            R E  L + I  YKK  VAL  GITMGGG  L V   F V +E T+F+ PE +IG   D G  +   RLPG LG +LALTG RL G ++  AG+ATHFV SEK+P LE+ L+ +
Sbjct:  118 REEYILNNAIGTYKKPYVALIDGITMGGGVGLSVHGHFRVASENTLFAMPETAIGLFPDVGGGYFLPRLPGKLGLYLALTGFRLKGSDVQKAGIATHFVESEKIPSLEQDLVAM 231          
BLAST of CX294906 vs. ExPASy Swiss-Prot
Match: HIBCH_DANRE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.917e-23
Identity = 59/116 (50.86%), Postives = 73/116 (62.93%), Query Frame = 1
Query:  256 RHEDWLCHHIHAYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNT 603
            R E  L + I  Y+K  VAL +GITMGGG  L V  +F V TEKT+F+ PE  IG   D G  +   RL G LG FLALTG RL G+++   G+ATHFV SEK+  LEK L+ L +
Sbjct:  115 REEYILNNTIGTYQKPYVALINGITMGGGVGLSVHGQFRVATEKTLFAMPETGIGLFPDVGGGYFLPRLQGKLGLFLALTGFRLKGRDVQRVGVATHFVQSEKIESLEKDLVDLKS 230          
BLAST of CX294906 vs. ExPASy Swiss-Prot
Match: HIBCH_HUMAN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.009e-22
Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 1
Query:  256 RHEDWLCHHIHAYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNT 603
            R E  L + + + +K  VAL HGITMGGG  L V  +F V TEK +F+ PE +IG   D G  +   RL G LG FLALTG RL G+++  AG+ATHFV SEKL  LE+ L+ L +
Sbjct:  119 REEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKS 234          
BLAST of CX294906 vs. ExPASy Swiss-Prot
Match: HIBCH_BOVIN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Bos taurus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.835e-22
Identity = 57/116 (49.14%), Postives = 74/116 (63.79%), Query Frame = 1
Query:  256 RHEDWLCHHIHAYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNT 603
            R E  L + I + +K  +AL HGITMGGG  + V  +F V TEK+VF+ PE +IG   D G  +   RL G LG FLALTG RL G+++  AG+ATHFV  EKL  LE+ L+ L +
Sbjct:  119 REEYILNNAIDSCQKPYIALIHGITMGGGVGVSVHGQFRVATEKSVFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYTAGIATHFVDFEKLGMLEEDLLALKS 234          
BLAST of CX294906 vs. ExPASy Swiss-Prot
Match: HIBCH_RAT (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.247e-21
Identity = 57/116 (49.14%), Postives = 73/116 (62.93%), Query Frame = 1
Query:  256 RHEDWLCHHIHAYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNT 603
            R E  L + I + +K  VAL  GITMGGG  L V  +F V TE+++F+ PE  IG   D G  +   RL G LG FLALTG RL G+++  AG+ATHFV SEKL  LE+ L+ L +
Sbjct:  118 REEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVHRAGIATHFVDSEKLHVLEEELLALKS 233          
BLAST of CX294906 vs. ExPASy Swiss-Prot
Match: HIBCH_MOUSE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.247e-21
Identity = 57/116 (49.14%), Postives = 73/116 (62.93%), Query Frame = 1
Query:  256 RHEDWLCHHIHAYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNT 603
            R E  L + I + +K  VAL  GITMGGG  L V  +F V TE+++F+ PE  IG   D G  +   RL G LG FLALTG RL G+++  AG+ATHFV SEKL  LE+ L+ L +
Sbjct:  118 REEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFLALTGYRLKGRDVHRAGIATHFVDSEKLRVLEEELLALKS 233          
BLAST of CX294906 vs. ExPASy Swiss-Prot
Match: HIBCH_XENLA (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.233e-21
Identity = 56/116 (48.28%), Postives = 71/116 (61.21%), Query Frame = 1
Query:  256 RHEDWLCHHIHAYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNT 603
            R E  L + I   KK  VA+  GITMGGG  L V   F V +EKT+F+ PE +IG   D G  +   RL G LG +LALTG RL G ++  AG+ATHFV SEKL  LE+ L+ + +
Sbjct:  118 REEYILNNAIGTCKKPYVAVIDGITMGGGVGLSVHGHFRVASEKTLFAMPETAIGLFPDVGGGYFLPRLTGKLGLYLALTGFRLKGSDVQKAGIATHFVESEKLSSLEQDLVAMKS 233          
BLAST of CX294906 vs. ExPASy Swiss-Prot
Match: HIBCH_DICDI (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Dictyostelium discoideum GN=hibch PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  304 QVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL 588
            QV++ +G  MGGG  L V  KF V TE TVF+ PE  IGF  D G S+   RLP + G +LALTG++L G  +  AG+ATHFV +E +  LEK +
Sbjct:  130 QVSIYNGFAMGGGIGLSVHGKFRVATENTVFAMPETGIGFFCDVGGSYFLPRLPNNYGMYLALTGSKLKGNNVYLAGVATHFVSNEHIQALEKEI 224          
The following BLAST results are available for this feature:
BLAST of CX294906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HIBCH_CHICK6.989e-2453.453-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_SCHPO2.656e-2346.903-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENTR3.469e-2350.883-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DANRE5.917e-2350.863-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_HUMAN1.009e-2250.003-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_BOVIN3.835e-2249.143-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_RAT3.247e-2149.143-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_MOUSE3.247e-2149.143-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENLA7.233e-2148.283-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DICDI6.770e-1949.473-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionC05057D01SK PhIFruit1 Citrus clementina cDNA clone C05057D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294906 ID=CX294906; Name=CX294906; organism=Citrus clementina; type=EST; length=626bp
TATATTAGGATCAGACAGAGAAAGGATGTGCATTCATTGATAGAAGCTAG
TTTAGAAATACATTCTTCAACATATTTATCAGGTTACATTACCGTCAACA
TCTTCCATTCACTGTGTGAGACAGTCACAACAATCAACATGCCTCATATA
GCGAAGCACACCACTTCCACTCTTGTACTCTTCAGAATAAAGAATGAGAT
ATGGCGAATCTGTTGGACCCTTTGCCTGCAATATGTGCCAGCCTCGTGCC
GAATTCGGCACGAGGATTGGCTTTGCCATCACATTCATGCCTATAAGAAA
ACCCAGGTAGCTCTTGCTCATGGAATTACAATGGGAGGAGGCGCGTCTTT
GATGGTTCCTCTGAAATTCTCAGTTGTCACGGAAAAAACTGTTTTTTCCA
CTCCAGAAGCAAGTATTGGATTTCATACTGATTGCGGTTTCTCATTCATC
CATTCTCGTCTCCCTGGACATTTAGGGGAATTCCTGGCCTTAACTGGGGC
AAGGCTAAATGGCAAGGAACTGGTTGCAGCTGGGCTAGCTACCCATTTTG
TCCCTTCTGAGAAATTGCCCGAGCTAGAAAAGCGTCTGATAGGCTTAAAC
ACTGGTGATGAAATTGCAGTCAAATC
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